Plant FIBer expression Database

Potri.008G135700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14810 617 / 0 semialdehyde dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G105300
[exp]
713 / 0 AT1G14810 629 / 0.0 semialdehyde dehydrogenase family protein (.1)
Potri.010G105000
[exp]
660 / 0 AT1G14810 596 / 0.0 semialdehyde dehydrogenase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013239
[exp]
636 / 0 AT1G14810 622 / 0.0 semialdehyde dehydrogenase family protein (.1)
Lus10030759
[exp]
628 / 0 AT1G14810 603 / 0.0 semialdehyde dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain
CL0139 GADPH_aa-bio_dh PF02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence
>Potri.008G135700.1 pacid=42807820 polypeptide=Potri.008G135700.1.p locus=Potri.008G135700 ID=Potri.008G135700.1.v4.1 annot-version=v4.1
ATGGCAAGTCTCGCTCACCCCGGTAGCCAAACCCGCCTATTCACCAAACTCTCCCATCAACCCAAAAAATTCACACCTCCTTCAAGAATCCGCATGTCCC
TTCAAGAAAACGCCCCCTCCCTCGCTGTGGTTGGCGTCACTGGTGCAGTTGGCCAAGAATTCCTCTCTGTCCTCTCTGACCGTGACTTCCCTTACCGTTC
CATCAAAATGCTGGCCTCTAAGCGCTCTGCTGGCAAGCAGCTCACGTTTCAAGATAGAAACTACACGATTGAAGAGCTGACAGAAGATAGCTTTGACGGG
GTCGATATTGCGCTGTTTAGTGCTGGTGGGTCCATCAGTAAGCATTTTGGGCCGGTGGCTGTGGACAAGGGAGCCATTGTGGTGGATAATAGCTCGGCTT
TTAGAATGGAAGAAGGGATTCCTTTGGTGATTCCCGAGGTTAATCCAGAGGCTATGGAAGGGATTAAAGTCGGGATGGGAAAGGGCGCTTTGATCGCCAA
TCCGAATTGTTCAACTATTATTTGTTTGATGGCGGCTACTCCTTTGCATAGGCATGCCAAGGTGCAACGAATGGTTGTTAGTACATATCAGGCAGCCAGT
GGTGCTGGTGCTGCAGCAATGGAAGAGCTTGAGTTGCAGACTCGTGAGGTCTTGGAAGGAAAACCACCAACTTGCAACATCTTTAAGCAACAGTATGCTT
TTAACTTGTTTTCACACAATGCACCTATTCTGTCAAATGGTTATAATGAAGAGGAAATGAAATTAGTTAAAGAAACCAGAAAGATCTGGAATGACATGAA
TGTTAAAGTCACTGCTACATGTATACGTGTTCCTGTCATGCGTGCACATGCTGAAAGTATCAATCTTCAATTTCAGCAGCCCCTTGATGAGGATACGGCA
AAAGATATTTTGAAGAGCACTCCTGGGGTGGTGGTTATTGATGACCGAGCATCTAATCACTTTCCTACACCTTTGGAGGTATCAAACAAAGATAATGTTG
CAGTTGGCAGGATTCGTCGTGATTTGTCGCAAGATGGAAATAAGGGGTTGGATATATTTGTCTGTGGTGATCAAATACGCAAAGGAGCTGCACTTAATGC
TATTCAGATTGCTGAGATGCTGCTATAG
AA sequence
>Potri.008G135700.1 pacid=42807820 polypeptide=Potri.008G135700.1.p locus=Potri.008G135700 ID=Potri.008G135700.1.v4.1 annot-version=v4.1
MASLAHPGSQTRLFTKLSHQPKKFTPPSRIRMSLQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDG
VDIALFSAGGSISKHFGPVAVDKGAIVVDNSSAFRMEEGIPLVIPEVNPEAMEGIKVGMGKGALIANPNCSTIICLMAATPLHRHAKVQRMVVSTYQAAS
GAGAAAMEELELQTREVLEGKPPTCNIFKQQYAFNLFSHNAPILSNGYNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESINLQFQQPLDEDTA
KDILKSTPGVVVIDDRASNHFPTPLEVSNKDNVAVGRIRRDLSQDGNKGLDIFVCGDQIRKGAALNAIQIAEMLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G14810 semialdehyde dehydrogenase fam... Potri.008G135700
[exp]
0 1
AT3G23620 Ribosomal RNA processing Brix ... Potri.015G088700
[exp]
3.87 0.8217
AT5G27395 Mitochondrial inner membrane t... Potri.013G026700
[exp]
7.61 0.8071
AT1G60770 Tetratricopeptide repeat (TPR)... Potri.006G157400
[exp]
9.89 0.7860
AT3G15460 Ribosomal RNA processing Brix ... Potri.011G122200
[exp]
10.24 0.8047
Potri.001G178400
[exp]
10.67 0.6757
AT5G09270 unknown protein Potri.007G102600
[exp]
16.43 0.7396
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.009G130600
[exp]
17.14 0.7439
AT5G67240 SDN3 small RNA degrading nuclease 3... Potri.007G048000
[exp]
17.86 0.7574
AT5G55830 Concanavalin A-like lectin pro... Potri.011G093700
[exp]
20.32 0.6733
AT5G02050 Mitochondrial glycoprotein fam... Potri.016G102200
[exp]
21.00 0.7687 SDH4.2

Potri.008G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.