Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 1205 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 699 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 548 / 1e-176 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19910 95 / 2e-19 RNA-dependent RNA polymerase family protein (.1) AT2G19930 92 / 1e-18 RNA-dependent RNA polymerase family protein (.1) AT2G19920 88 / 2e-17 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105200 [exp] 1605 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 1601 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 1303 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 756 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.018G028100 [exp] 558 / 1e-180 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 556 / 6e-180 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.007G081300 [exp] 111 / 1e-24 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 110 / 2e-24 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019164 [exp] 1267 / 0 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 668 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002017 [exp] 568 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 540 / 9e-178 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 405 / 1e-129 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 370 / 3e-119 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 129 / 7e-35 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 96 / 3e-23 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 95 / 2e-19 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.008G135800.3 pacid=42806893 polypeptide=Potri.008G135800.3.p locus=Potri.008G135800 ID=Potri.008G135800.3.v4.1 annot-version=v4.1 ATGGATTATGATATTGTTCCAACGCGAATGGCCGCTGAGTATACCATAGATAACATAACACTGCACTTTGGATGTCAAGTTTCGAAAGAAAAATTTTATG CTCTCTGGAATAAGGAAAATGTTTCGGTAAAATTTGGTTTTGGAAACAGGAAAATCTACCTCTTCCTGACGTACCTTTCTACAAAATACAAGCTCGAGCT ATCTTACGAAAATATTTGGCAGATTGAGCTGCATCGACCTCGGGGACAAGCTAAGAAATTTCTCATTGTCCAGATGCTCGGGGCCGCCAAGATTCTTAAG AAAGATACTGATGATCAGTGGGTCCGAGATGTTGATTTTTCTCCATCTTACTGCATTGGCCAATCTTCTGCTTTGTGCTTGGAGCTTCCACGCAGCGGCC AACTTCCTAATTTTCAGGAAAATTTTCCCTGTTATAAAGAAGATGAAGGTCGCTTCTTTCTGGAAGTGGGATCAACTTTCTGTCGCGTGTCAGATCTTGT TCCCATTTTGAGGGAAGCTCAAGGAATTGAACTGCCATATGACATCGTGTTTAAAGTCAATTCCTTGGTCCAGCATGGCTATCTTCCTGGACCAGCACTT GATGCAAGTTTCTACCGTTTGATCAATCCATCTAGAGTAAACATTGCACACATACAAAATGCGCTTGAGAAACTGCATCATTCGATGGAGTGCTGTTATG ATCCTGTAAGGTGGCTGCGGGAGGAATATCGGAAATGCATCTCCACTGGCAGACTTCCTACACCACCTGCAGTTGCCGTAGATGATGGATTGGTGCATGT ACGTCGGGTTCAGATAACCCCTACTAAAGTTTACTTCCGCGGTCCAGAGGTGAATCTCTCCAATCGCGTTTTACGCAAATATCCTGATGATATTGATAAC TTTCTCCGGGTTTCTTTTGTTGATGAGGATCTAGATAAACTTTTTTCAACAAATATATCTCCACGGACATTTTCTGCAATCGAGGGGAGGCAAACCAAGA TTTATCAAAGGATATTGTCGACTCAAAGAAATGGCATAGTTATTGGGTCTAAGAAGTTTGAGTTTCTAGGTTTCTCATCAAGTCAACTACGAGAAAGTTC TCTTTGGATGTTTGCTTCTAGAACTGGGCTTAGAGCAGCGGATATTAGAAGATGGATGGGTGATTTTCGTGAGATAAAGAATGTGGCCAAATATGCTGCA AGGCTTGGTCAGTCTTTTGGCTCATCGAGGGAAAGTTTCAATATTGATGAGAAGGAAATAGAAAAGATTCCGGATATAGAGGTTAGAAGTGGTGGAGTCG ACTATGTATTCTCTGATGGTATTGGAAAGATTTCAGCAGCATTGGCACATAGCATAGCACAGAAATTTGGCTTTCTAAGTTTTACTCCATCCGCCTTTCA GATTAGATACGGCGGGTACAAAGGTGTTGTGGCTGTTGATCCCACTTCCTTAAAGAAATTGTCATTGAGGAGAAGTATGTCAAAGTACAAATCAACTAAC ACTAGCTTAGATATTTTGGGATGGAGCAAGTATCAGGCTTGTTATCTCAATCGTGAAGTGATTACTCTTCTATCCACCCTTGGAGTTAGGGACCACATTT TTCAAAGGAAGCAAAAAGAGGCCATAGCTCAACTAAATGCTATTTTAACTGATCCATCAAGTGCACAGGAGGCACTCGAGTTGATGGCTCCAGGAGAGAG CACAAACGTTTTGAAGGAAATGCTTGCATGCGGTTATAAACCGGGTGCAGAGCCATTTCTTGCAATGATGCTGCAAACATTCTGTGCATCAAAGTTGCTT GATTTGCGGACAAGAGCGCGGATATTTATTCCAAAAGGAAGAGCGATGATGGGATGCTTGGATGAAACCAGGACGTTGGGATATGGTCAAGCATTTGTTC AGTATTCTAGTGCTAGACATGGGCAGTTCCGTGATCATTCCAGAGGTGGCGAAGCAGTGAGAAATACTCAGATTTTGAAGGGAAAGTTAATTGTCGCAAA AAACCCGTGTCTACACCCAGGAGACGTGCGGGTCTTAGAGGCTGTGAATGTGCCAGCTTTGCATCACATGGTGGATTGCATCGTTTTTCCCCAAAAAGGA AAGAGACCACATGCAAATGAATGCTCGGGAAGTGATCTAGATGGAGATGTTTACTTTGTATGTTGGGACCCTGATCTTATTCCTCCTCGGACATTTCCAC CCATGGATTATACGGCAGCACCAACTACGATTTTGGATCATGATGTTACGATAGAGGAAGTTCAAGAGTATTTTACGGATTACCTTCTCAACGACAGCTT AGGGATCATTTGCAATGCTCACACGGTCTTTGCAGACAGGGACCCTCTCATGGCAAGAAGTAAAGAATGTATTGAGCTTGCTCGGCTGTCCTCAATCGCT GTTGACTTCCCCAAAACTGGGGTGCCAGCTAAAATCCCTCGCGAACTACGTGTCAAAGAATATCCAGATTTCATGGAAAAGGCAGCGGATAAACGTACCT ATGAATCCCAGCGTGTGCTTGGAAAGCTTTTTCGAGATGTAAGAGACATTGCACCAGACACGAGTCCCGTAAGATCCTTCACTAAGGAAATGGCAAGGCG GTCTTATGACCCTGACATGGAAGTGGATGGATTTCAGAAGCATATCGACGAGGCTTTCCACTATAAAAGTGTGTATGATAACAAGTTGGGGAACATGATG GATTATTATGGGATCAAAACTGAGGCCGAAATAATCAGCGGTAGCATCATGAAAGTGGGGAAGTCTTTTGACAAGAAAAGAGACTTTGATTCTATTAATT ATTCTATAAGGTCCTTGAGGAAGCAAGCTAGAGCCTGGTTTGACGAGAGCGACAATAGCCCTGATGATCTTTACGCAAAAGCATCAGCTTGGTACTACGT CACATATCATCCTAGCTATTGGGGTCGCTACAACGAGGGAATGAACCGAGTTCATTTCCTCAGTTTTCCCTGGTGTTTTTACGACAAGCTAATTGACATT AAGAAGGGCAAAGCATTGGGTGGTGGAGGGGCTTCGCGGTTGACATCACTGGTGCACCGGTTCAGTCAAGCTTCATTTAGAGATTGA
AA sequence Show only first row Show all	>Potri.008G135800.3 pacid=42806893 polypeptide=Potri.008G135800.3.p locus=Potri.008G135800 ID=Potri.008G135800.3.v4.1 annot-version=v4.1 MDYDIVPTRMAAEYTIDNITLHFGCQVSKEKFYALWNKENVSVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQAKKFLIVQMLGAAKILK KDTDDQWVRDVDFSPSYCIGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIELPYDIVFKVNSLVQHGYLPGPAL DASFYRLINPSRVNIAHIQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAVDDGLVHVRRVQITPTKVYFRGPEVNLSNRVLRKYPDDIDN FLRVSFVDEDLDKLFSTNISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLRESSLWMFASRTGLRAADIRRWMGDFREIKNVAKYAA RLGQSFGSSRESFNIDEKEIEKIPDIEVRSGGVDYVFSDGIGKISAALAHSIAQKFGFLSFTPSAFQIRYGGYKGVVAVDPTSLKKLSLRRSMSKYKSTN TSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQLNAILTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLL DLRTRARIFIPKGRAMMGCLDETRTLGYGQAFVQYSSARHGQFRDHSRGGEAVRNTQILKGKLIVAKNPCLHPGDVRVLEAVNVPALHHMVDCIVFPQKG KRPHANECSGSDLDGDVYFVCWDPDLIPPRTFPPMDYTAAPTTILDHDVTIEEVQEYFTDYLLNDSLGIICNAHTVFADRDPLMARSKECIELARLSSIA VDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQRVLGKLFRDVRDIAPDTSPVRSFTKEMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMM DYYGIKTEAEIISGSIMKVGKSFDKKRDFDSINYSIRSLRKQARAWFDESDNSPDDLYAKASAWYYVTYHPSYWGRYNEGMNRVHFLSFPWCFYDKLIDI KKGKALGGGGASRLTSLVHRFSQASFRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G135800 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182300 [exp]	4.24	0.8055
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027800 [exp]	6.00	0.8019
					Potri.002G190700 [exp]	10.53	0.8048
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.019G099500 [exp]	14.96	0.7438
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	20.49	0.7458
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	21.00	0.7370
					Potri.008G087651 [exp]	24.08	0.7533
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.019G099400 [exp]	25.37	0.7308
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014600 [exp]	29.22	0.7749
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182000 [exp]	30.00	0.7393

Compare expression of checked genes

Potri.008G135800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.