Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16510 342 / 2e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111100 [exp] 484 / 2e-176 AT4G16510 346 / 7e-122 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Potri.001G122501 [exp] 76 / 1e-16 AT4G16510 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000734 [exp] 336 / 9e-118 AT4G16510 324 / 2e-113 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Lus10008505 [exp] 318 / 2e-110 AT4G16510 298 / 9e-103 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [poplar] [flax] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Potri.008G135980.1 pacid=42808411 polypeptide=Potri.008G135980.1.p locus=Potri.008G135980 ID=Potri.008G135980.1.v4.1 annot-version=v4.1 ATGATAAACTCCTCCAACTTCCAACTGAAAATACAGGAGGCGCCGCTAATGGAACCACAGCTAGCAGAGCTGGAGCGACTTCAAACCCGAATCCTTAATC GAATATCCAAACTCGAGCTCTCTCTTTCTACCCAAAACAACAACAACAATAACCTCTCCGCCTGCGACGGCGGCGATACCACCGAAGCTCGCCTCTCCAC CATTCTCCGATCAAACGGCGTGAATGACTTCGCCTTCAAAAAAGTCTCCTCCGATTACTACGATTGGCCTCTTGAGTCCCGGCGCGACGTCCTCGGTGCC GCCTCTATCGATCACCTCTGTAAAAGCATCGTCTTGGTTAATACCCAGGCCCCATCCAATATCACTGACTGCAGTGACTGCAATAATTCGAAGTATTACA TAGTTGTTGTTCAGTACACTGCTCGATTCAATGCTGAAACTGTTAAAAACTATCTGTATGCTCTCAATGATGGCAAGATAGCTAAAAAGAGATTCAACTT GAGGCTTGCCCCTGAGGAGACATCAATGAAGCTGACAGGATACGGGCACAATGCGGTGACATGTATTGGCATGAAAACCAACATTCCGGTGATTTTGGAT GAAGCAATTCTAAGACTCAATCCCGATTTCTTCTGGTTGGGCGGAGGAGAGATTGATTTGAAGCTGGGGATAAGGACTTCTGAATTTATTGATTTTGCTA AACCATTCATTGTCAGCTGCAGTGGCACATGA
AA sequence Show only first row Show all	>Potri.008G135980.1 pacid=42808411 polypeptide=Potri.008G135980.1.p locus=Potri.008G135980 ID=Potri.008G135980.1.v4.1 annot-version=v4.1 MINSSNFQLKIQEAPLMEPQLAELERLQTRILNRISKLELSLSTQNNNNNNLSACDGGDTTEARLSTILRSNGVNDFAFKKVSSDYYDWPLESRRDVLGA ASIDHLCKSIVLVNTQAPSNITDCSDCNNSKYYIVVVQYTARFNAETVKNYLYALNDGKIAKKRFNLRLAPEETSMKLTGYGHNAVTCIGMKTNIPVILD EAILRLNPDFFWLGGGEIDLKLGIRTSEFIDFAKPFIVSCSGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	0	1
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.003G111100 [exp]	1.00	0.8377
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	3.00	0.6943
AT3G28720			unknown protein		Potri.017G078700 [exp]	4.69	0.7022
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	4.89	0.6868
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	13.22	0.6549	ATTIM23.2
AT1G64890			Major facilitator superfamily ...		Potri.019G043000 [exp]	16.24	0.5841
AT3G51940			unknown protein		Potri.001G021100 [exp]	25.74	0.5996
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	27.12	0.6193
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.006G240900 [exp]	33.67	0.5716
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	35.72	0.6081	EMB78.2

Compare expression of checked genes

Potri.008G135980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.