Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RDR902,Pt-RDRP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 1448 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 750 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 541 / 4e-173 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19930 116 / 4e-26 RNA-dependent RNA polymerase family protein (.1) AT2G19920 115 / 8e-26 RNA-dependent RNA polymerase family protein (.1) AT2G19910 109 / 5e-24 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105200 [exp] 1394 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 1381 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 1315 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 790 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G253500 [exp] 580 / 0 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.018G028100 [exp] 576 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.007G081300 [exp] 135 / 4e-32 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 131 / 1e-30 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019164 [exp] 1638 / 0 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 750 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002017 [exp] 592 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 559 / 0 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034262 [exp] 418 / 8e-137 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10002361 [exp] 410 / 2e-130 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034390 [exp] 146 / 7e-41 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 141 / 2e-39 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 98 / 2e-20 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.008G136100.1 pacid=42808870 polypeptide=Potri.008G136100.1.p locus=Potri.008G136100 ID=Potri.008G136100.1.v4.1 annot-version=v4.1 ATGAGTAAGACAGTTAAAGTTTCTGGATTCCCTTCTAGCACGACTGCAGGAGCAGTGCAGGTGTTTTTGGAATCACATACTGGTGGTGGAACTGTTGAAG CTCTTAAGATCAGGGAAATAAGAACGGGAGGTGCAAGGAAATACGCTATTGTCCAATTCACAACCACAAGAGCTGCTGAACAGATTATCTCCTTAGCTAA TCCACGCCTGTGGTATGGTCATTCATATCTTAATGCTCGGCCAATGGATCGTGATATCATACCACAGCCCAGATCTTTTTTGCATACCATGGAAAGTGTG ACACTTCACTTTGGCTATCAGACTTCTAAAGAGAAGTTTTCTGCTGTCTGGAGCGGGAACAATGTTTCTGTGAATTTTGGATTGGGAATGAGGAAGTTAC ATTTTTTCCTGTCACATAATCTAGCTGAATACAAGCTTAACCTTCTCTTTGAAAACATTTGGCAGATTGAACTACATCGCCCTCGTGGCCAAACTGTGAA GTATCTTCTAATTCAGTTATATGGTGCACCTCGGATTTATGAGAGAGACGTACCCTCTTCGTCGAATGTATTTGAGGATCCACTTCTCAATTATTTTAGG GATGTTCCTGATGAACAGTGGGTCAGGACAACTGATTTTACTCCATCATGCGGCATTGGGCATTCATCTTCATTATGTTTGGAACTTCCTAATCATCTAC AACTTCCAAATTTCAACGAGAACTTTTTCTACTATAAAGAAAATGAAGGAACATTTGTTTTGGAGAGTGGTTTGACCTTTTCCCGCAATCCGGATCTAGT CCCCATTGTTGGCCCATCCTCAGGTGTTAATTTGCCTTATAACATCTTATTTAGGGTTAACTTGTTGGTTCAGAATGGGTGCCTTGCAGGGTCAATGCTC GATGATATTTTTTACAGGTTGGTTGATCCAAATAGAATGCCTGTCCGTTGCATAGAGTATGCCCTTGAGAAGCTATATCACCTGAAAGAATGTTGTTATG AACCTTCTAAGTGGTTCAATGAACAGTACAAAAAGTATCTTACCTCAGGAAACCCTCCAAGGTCACCTGTTCTATCCTTAGATGCTGGTTTGGTATACGT TTACAAGGTTCAAATAACTCCTTGTAAAGTGTTTTTCTGTGGTCCAGAGGTTAATGTCTCAAATCGTGTACTTCGCCAATATCGAGAAGACATCGATAAC TTTCTTCGTGTTTCTTTTGTTGATGAGGAGTTAGAGAAAATTCATTCAACAGATGTATCTCCGCGAACATCTTCTAGAAATGAGCTTAGGAGAACTGCAA TTTACAACAGGATTCTTTCCACTCTGCAAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTCCTTGCCTTTTCATCCAGTCAGTTGCGGGAGAATTC ATGCTGGATGTTTGCTTCAAGACTCGGGCTCACTGCTGCAGATATAAGGGCATGGATGGGCAGTTTTCATAAGATTAGAAATGTGGCTAGGTATGCTGCC AGACTGGGTCAATCCTTTGGTTCATCCACTGAAACTCTGAGTGTTAGCAGCCATGAAATTGAAATTATTCCGGACATAGAAGTTTCAAGGGGAGGAACTA GATATTTGTTCTCTGATGGTATTGGCAAAATATCTGCTGAATTTGCAAGGAAAGTGGCCATAAAATGTGGCTGCAAAGGTTTCACTCCATCTGCATTTCA GATTCGATATGCTGGCTATAAAGGTGTAGTAGCAGTTGATCCAACTTCATCGAAAAAATTATCATTGAGGAGGAGTATGTTCAAATACGAGTCTGAAAAC ACAAAACTGGATGTTCTAGCACATAGCAAATATCAGCCTTGTTTTCTGAATCGCCAACTCATTACTCTTCTTTCTACTCTTGGAGTTCCAGATCATCATT TTGAGAGAAAGCAGAGAGAAGCTGTAGATCAACTTGATGCTATGTTGACAGATCCATTAAGGGCACAGGAGGCACTGGAGTTGATGTCTCCAGGAGAGAA TACCAACATTCTCAAGGAAATGCTTTTGTGTGGTTATCAGCCTGATGCTGAACCATTCCTTTCAATGATGCTCCAAACATTCCGGGCATCGAAGTTGCTG GAATTACGGACAAAAACAAGGATATTTATTCCAAATGGAAGATCAATGATGGGATGTCTAGATGAAACTAGAACCTTGGAACATGGGCAGGTATTTGTAA AATTTTCTGGCTCTAGATTTCGGAACTTGTATGATAGTTCTGACATGTTCAGTGAAAGAGGACGAGGACAGTGTTATCTGATTAAGGGAAGTGTAGTGGT GGCCAAAAACCCTTGCTTGCACCCAGGTGATTTGCGCATTTTAAAGGCAGTGGATGTGCCAGCTTTGCACCATATGGTTGATTGTGTTGTTTTTCCGCAG AAAGGTCCAAGACCTCACCCAAATGAATGCTCTGGAAGTGATTTGGATGGAGATATCTATTTTGTCTGTTGGGATCCGGAGTTGATTCCTAGTCAGCAAA TCTCACCAATGGACTATACCCCAGAGCCCCCTCTGCAGCTGGATCATGATGTTACTATTGAGGAAGTCGAGGAGTATTTCACAAACTACATAGTTAATGA CAGCTTGGGAGTAATTGCAAATGCTCACACTGCCCATGCCGATAAAGAATCTCTCAAAGCAATGAGTGAACCATGCGTAGAGCTTGCACGTAAATTTTCA ATTGCGGTTGACTTTCCAAAGACTGGAGTACCAGCTGAAATACCTTCTAATCTTCGTGCAAGAGAATATCCTGACTTTATGGAAAAGCCTGACAAACCCT CCTATGAATCACGTAATGTGATTGGAAAGCTTTTCCGAGAAGTGAAAGACATTGCGCCACGGACCAGCTCTATTAGGTCATTTACATCAGATGTGGCGAG GCAGTGTTATGACCCTGATATGGAAGTTGATGGCTTTGAGGATTACATAGATGATGCCTTTTATTACAAAAGCAATTATGATTACAAGCTGGGCAATCTT ATGGAGTATTACGGCATCAAAACCGAGGCAGAACTTCTTAGTGGAAGTTTCATGAAAATGTCAAAATCTTTCACGAAGAAAAGGGATGCAGAGGCGATTG GAATGGCAGTAAGGTCTTTGAAAAAAGAGGCTAGGTCCTGGTTCAATGAAAAGGGAAGCGGGTTAGATTCTCAAGCTGATGATGTAGACGCAAAAGCCTC AGCCTGGTACCATGTCACATATCATCATAATTATTGGGGTTGCTACAATGAGGGAATGAATCGAGACCATTTTCTTAGTTTTCCATGGTGTGTCTATGAT AAGCTGATCCAGATCAAGAGGAGGAATAGTGCAAGAATTAGAAGATCTCTAATTTTGCCTTCTGTCGAACGTCAATTCAGTCGCGGATTACATTTGAGTT AA
AA sequence Show only first row Show all	>Potri.008G136100.1 pacid=42808870 polypeptide=Potri.008G136100.1.p locus=Potri.008G136100 ID=Potri.008G136100.1.v4.1 annot-version=v4.1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESV TLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFR DVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML DDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDN FLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAA RLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESEN TKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLL ELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQ KGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFS IAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNL MEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYD KLIQIKRRNSARIRRSLILPSVERQFSRGLHLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	0	1	RDR902,Pt-RDRP.1
AT5G07610			F-box family protein (.1)		Potri.013G065500 [exp]	2.82	0.8187
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.014G100200 [exp]	3.46	0.8365
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.004G056900 [exp]	5.09	0.8302	Pt-DOF2.2
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131200 [exp]	5.09	0.8021
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207479 [exp]	7.34	0.8030
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	10.48	0.8028
AT4G31980			unknown protein		Potri.003G208300 [exp]	14.31	0.8131
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	16.00	0.7559
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.010G102700 [exp]	19.07	0.8078
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	21.35	0.8053	ARR12.2

Compare expression of checked genes

Potri.008G136100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.