Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSF5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67970 322 / 3e-108 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT1G32330 221 / 2e-67 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 216 / 1e-65 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 207 / 3e-62 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G22830 191 / 1e-56 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 187 / 1e-54 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 184 / 1e-54 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G54070 162 / 2e-46 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT3G51910 159 / 4e-46 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G43840 159 / 7e-46 HSF AT-HSFA6A heat shock transcription factor A6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104300 [exp] 690 / 0 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1) Potri.001G138900 [exp] 237 / 2e-73 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 234 / 4e-72 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.002G048200 [exp] 198 / 5e-60 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 201 / 9e-60 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.005G214800 [exp] 196 / 3e-59 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 190 / 4e-57 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 189 / 2e-56 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G148200 [exp] 177 / 2e-50 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003707 [exp] 382 / 1e-131 AT1G67970 282 / 2e-92 heat shock transcription factor A8 (.1) Lus10001591 [exp] 379 / 2e-130 AT1G67970 285 / 1e-93 heat shock transcription factor A8 (.1) Lus10040091 [exp] 231 / 2e-71 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 229 / 2e-70 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10000312 [exp] 224 / 6e-69 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 223 / 2e-68 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040911 [exp] 214 / 8e-65 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10039376 [exp] 202 / 2e-61 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 201 / 2e-60 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 182 / 1e-53 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.008G136800.2 pacid=42806104 polypeptide=Potri.008G136800.2.p locus=Potri.008G136800 ID=Potri.008G136800.2.v4.1 annot-version=v4.1 ATGGTGAAATCAAGCGATAGTGGGGTGGCTCCTTTCTTGAAGAAATGCTATGAAATGGTAGGTGATGAGTCAACAAATTCGATAATCTCATGGAGCCAAA CCAATGACAGCTTTGTCATATGGGACATGACTGAATTCTGTGTCCACTTGTTGCCCAAGTACTTCAAGCACAGCAATTCTTCTAGTTTTGTCAGACAGCT CAATATCTATGGATTTAGAAAGATTGATACAGATCATTGGGAATTTGCAAATGATGGATTTATCAGAGGGCAGAAACATTTGTTAAAGAATATCAGCAGG AGGAAAAATTCACAGGGCACAGACAATCGAAAATTAGTGCAGCAGCAGGACAACTCCGTGGAACACCATGAAAGCGTTGAAAATGCGGGTCTCTGGAAGG AAGTTGAGAACCTAAAGACTGGTAAAATTGCACTGACGCAGGAGTTGGTTAAGCTCAGCCAGCACCAGGAAACTGCAGACAATAAGTTGCTCCTTTTGAG GGATCGGCTTCAGGGAATGGAAAAGAATCAGCAGCAGATGCTGTCTTTCTTAGTGATGGCAATGCAAAAAAGCCCAGGGTTTCTAGCTCAGCTACTACAC AAAAAGGAAAATAATTGGCGGATGGCTGAGCCAGGAAGCATTGTGGAACAGGTTGCAGATGATGCTGACCCATTGGCTTCTGAGGGGATGATAGTAAAGT ACCAGCCACCAGTGGATGAGACATTTGAGCCCATGCATGCACCACCGATTGGTCCAGAAAATCCACGAGAATCTAACCCATCTTCTGATGGGATGAAAGA TTTTTTTTTTAGTTCAGAATTCACGGAGCTGCTTATGGATGAGAATTTGGGTTTTGAAAATCACGCCCCATTCGTTCTACCAGAATTAGCAGATGATGGT GCTTGGGAGCAGCTGCTTTTAGCCAATCCTTTTGTTGCAAACATTAAAGATTCCGAAACAGATTATGAAGAGCCCACTGATGCTGAAACTGATACAGGAA CAGCAGTTCCAGGAACACAGCTGGACAGATCTCAAGATTTTGAAAATTTAATTGAACAAATGGAGAAGTATCATAACTTGGAAAACCAAGCTACTGATGA AGGTCCTCACTTCGAGAAGCCTCGGAACTTGGAAATTCTAACTAAGCAGATGGGTCTTTTGGCTTCTGAGACAAACCACTAA
AA sequence Show only first row Show all	>Potri.008G136800.2 pacid=42806104 polypeptide=Potri.008G136800.2.p locus=Potri.008G136800 ID=Potri.008G136800.2.v4.1 annot-version=v4.1 MVKSSDSGVAPFLKKCYEMVGDESTNSIISWSQTNDSFVIWDMTEFCVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDHWEFANDGFIRGQKHLLKNISR RKNSQGTDNRKLVQQQDNSVEHHESVENAGLWKEVENLKTGKIALTQELVKLSQHQETADNKLLLLRDRLQGMEKNQQQMLSFLVMAMQKSPGFLAQLLH KKENNWRMAEPGSIVEQVADDADPLASEGMIVKYQPPVDETFEPMHAPPIGPENPRESNPSSDGMKDFFFSSEFTELLMDENLGFENHAPFVLPELADDG AWEQLLLANPFVANIKDSETDYEEPTDAETDTGTAVPGTQLDRSQDFENLIEQMEKYHNLENQATDEGPHFEKPRNLEILTKQMGLLASETNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.008G136800 [exp]	0	1	Pt-HSF5.2
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G034400 [exp]	3.31	0.9293
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	4.47	0.9257
AT1G06540			unknown protein		Potri.005G201300 [exp]	6.00	0.9220
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	7.07	0.8922
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	8.00	0.9172
AT5G24010			Protein kinase superfamily pro...		Potri.005G144200 [exp]	14.28	0.9177
AT3G52105			unknown protein		Potri.006G054200 [exp]	16.24	0.9143
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	16.43	0.9150
AT2G17640		SAT-106, AtSera...	SERINE ACETYLTRANSFERASE 106, ...		Potri.011G068001 [exp]	17.40	0.8772
AT3G61670			Protein of unknown function (D...		Potri.001G093900 [exp]	18.33	0.9112

Compare expression of checked genes

Potri.008G136800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.