Plant FIBer expression Database

Potri.008G137000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16020 720 / 0 Protein of unknown function (DUF1712) (.1), Protein of unknown function (DUF1712) (.2)
AT1G80910 718 / 0 Protein of unknown function (DUF1712) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021811
[exp]
797 / 0 AT1G80910 681 / 0.0 Protein of unknown function (DUF1712) (.1)
Lus10034582
[exp]
783 / 0 AT1G80910 699 / 0.0 Protein of unknown function (DUF1712) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Potri.008G137000.1 pacid=42806799 polypeptide=Potri.008G137000.1.p locus=Potri.008G137000 ID=Potri.008G137000.1.v4.1 annot-version=v4.1
ATGGGAATGGCATCTGCAAACAGCGGAGGAAGCGAAGGGATGGAATTGTGCATATTTGATTTGAGAAGAGGACAGCAAGAAGGGCAGGAACTAGACAAGA
TCTTGTTCTTCTTTCCTGCTGATTTACCCTTTTCAACCCAACTCTCTGTCATCGGACTCAGTGAAGGACTCATCACTTTTACCAGAATTTTCTCTCCAGA
GGCAGCTTGTGAGGTGATAGAAGCAGAGAGGCATTCTCATGTTTTTTACGAGGCAGAGCCCGATATCTGGATGGTCATGGTAGTGGAGAAAAGTAAGGAA
GCAGAAGCAATATGGCGGGTCGAGGCATTGCGAGAAGTTCTCAAGGAAATTCATTCTCTTTTTATGATGTTTTATGGGCCTGTAAGAGAAATGCTTGAGA
AAGATCCTAGTGGAGGACAGATTCGAGCTCATCTCTACCCTTTTGTCATGGATTATCTAAGTGCATGTCAAAAGCGGTCTCCATTGGATTACTGCTGCTG
GGATTTCCTTGTCGGGAAGAAAATTCAATTACCATCATTTCGTGATTGTTTGAAGGAATGTGGAACTGTACAGATGCTGACTGTCGGGAGGGAGGCAGCT
ATTGAGGTTCAGTCACTTGTGAGGGTACTTGAGTCTGGTGCTGGGGCCACACATTGCTATTCACTGATCTTGTTTCAAGACTTGCTTGTGTCCACGACGC
TTTCACCTGATGACACCATAAATTTATTTGCGTATGCAGTTCAAAGGTTGTCACCTCGTGCTTTGTCATCTGGAGTAAGTTCATGGTCCTATCTACGCAG
AGGAAGTACTCCTTCTCATGTTGTTGTAGGGCCTACCTTTGCCACTGTCTCTGTTTCTGATCAATTCCATCAATTGCATGCTACTTCTCCTAGTCAAGAT
AACAGTTATCATGTTAAAAGGCCCTTACAGCACAACAGGTGGTCTAAAGGGAAGGATGGTTTTCTGGTCACTGATATTTGGGGAACGGAGACTGGTAGTT
TGATTCCTTCCACCCCAACAATTTGGCTTCAGCAGACCGGGGAAAGAATGTATCTCTGTGCTTACCAGTATAAAAGCCTTACCTTAATCCTCCTGGTTCC
TTTGTCCTCCATTCTTAATGGGGAGCAAGGTGTCTCCCTGGTCAAGCAGCAGGTTCTTGAAAATGCATCACTTAAGATTTTAAAAGTTGAAGAGAAACTA
TCAAAAGGATGGGGTGGTGAGAATGCTTATCATGTCAGTGGGTACCGTTATCTACTCATTGATGATGATAGAAATGTATCCAGGGCTTCTCCTCCAGCAA
AGGTTACAACCCTAGCAAAGGAATCGTTGCTTGCCATGAGTAAGCTTAGAGAAGAGGTAGATTTGGAGAAGAGTAGATCAAAATGGGATAATGCAGATCG
TGACAAAGATTTGGAAATATGCATTAGAGCGAAAAACAATGCTTGGGTTATTGCTCGTACTACTAGAGGGAAGGAGCTTTATATGGTTCTGGAAAGGGCC
AATGAAACACTTCTTTATGCTTCTGATGCCTTTGAGAGGTTCAGCGACAGGTATTGTGGTGGCGCTTTTTCTTTGGATTAG
AA sequence
>Potri.008G137000.1 pacid=42806799 polypeptide=Potri.008G137000.1.p locus=Potri.008G137000 ID=Potri.008G137000.1.v4.1 annot-version=v4.1
MGMASANSGGSEGMELCIFDLRRGQQEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEVIEAERHSHVFYEAEPDIWMVMVVEKSKE
AEAIWRVEALREVLKEIHSLFMMFYGPVREMLEKDPSGGQIRAHLYPFVMDYLSACQKRSPLDYCCWDFLVGKKIQLPSFRDCLKECGTVQMLTVGREAA
IEVQSLVRVLESGAGATHCYSLILFQDLLVSTTLSPDDTINLFAYAVQRLSPRALSSGVSSWSYLRRGSTPSHVVVGPTFATVSVSDQFHQLHATSPSQD
NSYHVKRPLQHNRWSKGKDGFLVTDIWGTETGSLIPSTPTIWLQQTGERMYLCAYQYKSLTLILLVPLSSILNGEQGVSLVKQQVLENASLKILKVEEKL
SKGWGGENAYHVSGYRYLLIDDDRNVSRASPPAKVTTLAKESLLAMSKLREEVDLEKSRSKWDNADRDKDLEICIRAKNNAWVIARTTRGKELYMVLERA
NETLLYASDAFERFSDRYCGGAFSLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16020 Protein of unknown function (D... Potri.008G137000
[exp]
0 1
AT5G60550 ATSNAK1, GRIK2 geminivirus rep interacting ki... Potri.009G012900
[exp]
5.47 0.7658
AT4G30010 unknown protein Potri.006G075600
[exp]
5.74 0.8455
AT3G05100 S-adenosyl-L-methionine-depend... Potri.013G034000
[exp]
7.48 0.8255
AT2G37770 ChlAKR, AKR4C9 Chloroplastic aldo-keto reduct... Potri.008G144600
[exp]
13.67 0.7767
AT5G56190 Transducin/WD40 repeat-like su... Potri.016G000800
[exp]
26.26 0.8050
Potri.001G426980
[exp]
27.94 0.7915
AT1G78895 Reticulon family protein (.1) Potri.008G004200
[exp]
28.61 0.7970
AT4G15563 unknown protein Potri.008G204800
[exp]
32.40 0.7817
AT3G13050 AtNiaP nicotinate transporter, Major ... Potri.007G003000
[exp]
37.22 0.7727
Potri.011G072716
[exp]
38.24 0.7750

Potri.008G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.