Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01810 561 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 502 / 9e-170 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 285 / 2e-86 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 268 / 3e-80 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 125 / 1e-32 transcription factor-related (.1) ATMG00550 101 / 6e-25 ATMG00550.1, ORF160 unknown protein AT1G32810 57 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 48 / 6e-06 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135200 [exp] 578 / 0 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 320 / 4e-100 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 266 / 2e-79 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 264 / 1e-78 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 261 / 2e-77 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 257 / 8e-76 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 56 / 9e-08 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 52 / 2e-06 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010966 [exp] 478 / 2e-160 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 469 / 7e-157 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 306 / 3e-94 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 296 / 3e-90 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 242 / 4e-70 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 219 / 8e-62 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 56 / 1e-07 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.008G137200.1 pacid=42807672 polypeptide=Potri.008G137200.1.p locus=Potri.008G137200 ID=Potri.008G137200.1.v4.1 annot-version=v4.1 ATGGCCATCACAACCACCATATTTGAAGCTTGCAGCAAGAAACGAAAAGGAAGCCCTCTCATTTCCACTTTCAACAACTCTTGTAGTCCTCCTCGTCCAC CACCACCACCCATGCCCCTTCATTCCGGCCCTTTCAGAGATAACATTAGAGAATTCCTCAAACATTGCGCTGAGATTGAAGACTATACTGTTTGTCACAA TCCCGTTTGGTGTGCTTTGCTCTTGAGTGACTCCACCGGCGTCGTTTTCCCTCTCTACGTTCTTGAAGAGAACATTCACTCTTCTCACCCTCGCCCACTT TGTGATCGCTGCAGATGCATTGGTTGGAGTCACCATTTTGTGTCAAAAAGAAGGTATCATCTGATAATTCCAAAGGACGATCAATGGAACAAACCTCTAA ACAAAGAATCTCTTGAGAAAAACAATCATCTCTTGCATGGTCTCATTCACTGCAATGGCTTTGGTCATCTCCTATGCATCAATGGAATTGAAGCCAACTC AAAATTCCTCCATGGGAAAGAACTCATGAATCTCTGGGATCATCTCTGCTCAATTCTCCAAACCCGTGAAATTTCAGTGGAAGACCTGTCAAAGAAAGCC GGAAGCATGGACCTTAGGTTGCTTCATGGAGTTGCTTATGGGCGTACATGGTTTGGAAAATGGGGTTACAATTTCAGCCGTGGAAGCTTTGGGGTTACAC AGCAGAAATATGAGAGAGCTATTCAAATCCTCAGCTCACTAGACGTCAGTAAGATTATTCATGACTTCATCAACAAAAGGCAAGGAGAATTGGTTAAAAG AATCATTAATATTTATAGGGATGCTAGTGAGACACGGTTGGTTACCATTAGTGATTTGTTTCAATTCATGCTTGCTCTGAACTCCACTCCCCTAATCCGA AGGAAAATAGCCTTGACATTGGCTGCTATTCCATCAAAATCATCAACACACTCAGCCCAACAACCAGAAACTTGTTTATTTAAGGATCCAAACCACCATA GTTCCTTTTCTTTTATTGCTAAATTCGATGAGAGTAGATGGCCTGCGAGAAGATTGGATGATGTAGTCAGAGTGGTACTTACTACTTTGGAAGCTAATGG ATCCAAAATGGATCGGCAAACCTTGCGTGATGCTGTTAGACAACACATTGGTGACACTGGTTTGATTGACTTTGTTATAAAAAACATCGATAAGGTTGCG GTGGAAAATCGATTCATTCATCGTGTTGTCAACCCAGTTACCAGAAAGTTAGTAATCTCACTTCAAGATGTTGTTCATGAAGGGAAAAGTGAAAAGAAAA TGGAGTCCCACGCTGATATTCCAGCTCTAGAACCAGGATTAGATGTTAACAAGGATTTGCATTTTTTGTACAATTATGTTTTATTGGGCTACCCCGATTC TCATTCAGTTACCCTAGCAATCAGAGCAATCTTGGATAGCAAGCATTTTGCCAAACAGTGGCAATTTAAGGGCAATAATGATCATGAGGATTCATTTCTA GGGCTTGTTCTCCGGCTTAGGCCAAGTTACAATGAATTGGTGAAAGAGTTGACACGGCCATTGCCACCAGGTGAACTTCTGGTGGTCCCACAGTATGCTA CTGTTGATGAGCTCAAATTGATGGTGCAGTGTGCCTTAAGGGATACATATTATGTAATGGACAAGTTTGCTGTGAAGGATGTACAGATAGGTAAAATAGA GGAAAAGGAGTACCAGGATGGGGTAATGTGCGAAGTGGAGCAAGGTGTGCAGGTTTGGGTTAGGGGGTGTGGGCTAGACTTGGATACAAAACTGAGGTAT CAAGGTGGTGCTGATGATTGGACAGTGGATTGTGGGTGTGGGGCTAAAGATGATGATGGGGAGAGGATGGTGGCCTGTGATGTTTGCCATGTGTGGCAAC ATAGAAGGTGCAACAGCATTAAGGATAATGAAGCTGCCCCTCGTATGTTTGTATGTTGTAGGTGCAAAAATGGTAGGAAGAAGTATTGA
AA sequence Show only first row Show all	>Potri.008G137200.1 pacid=42807672 polypeptide=Potri.008G137200.1.p locus=Potri.008G137200 ID=Potri.008G137200.1.v4.1 annot-version=v4.1 MAITTTIFEACSKKRKGSPLISTFNNSCSPPRPPPPPMPLHSGPFRDNIREFLKHCAEIEDYTVCHNPVWCALLLSDSTGVVFPLYVLEENIHSSHPRPL CDRCRCIGWSHHFVSKRRYHLIIPKDDQWNKPLNKESLEKNNHLLHGLIHCNGFGHLLCINGIEANSKFLHGKELMNLWDHLCSILQTREISVEDLSKKA GSMDLRLLHGVAYGRTWFGKWGYNFSRGSFGVTQQKYERAIQILSSLDVSKIIHDFINKRQGELVKRIINIYRDASETRLVTISDLFQFMLALNSTPLIR RKIALTLAAIPSKSSTHSAQQPETCLFKDPNHHSSFSFIAKFDESRWPARRLDDVVRVVLTTLEANGSKMDRQTLRDAVRQHIGDTGLIDFVIKNIDKVA VENRFIHRVVNPVTRKLVISLQDVVHEGKSEKKMESHADIPALEPGLDVNKDLHFLYNYVLLGYPDSHSVTLAIRAILDSKHFAKQWQFKGNNDHEDSFL GLVLRLRPSYNELVKELTRPLPPGELLVVPQYATVDELKLMVQCALRDTYYVMDKFAVKDVQIGKIEEKEYQDGVMCEVEQGVQVWVRGCGLDLDTKLRY QGGADDWTVDCGCGAKDDDGERMVACDVCHVWQHRRCNSIKDNEAAPRMFVCCRCKNGRKKY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01810			RING/FYVE/PHD zinc finger supe...		Potri.008G137200 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Potri.002G147200 [exp]	14.03	0.7922
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.002G062200 [exp]	15.58	0.7536
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.002G238600 [exp]	36.74	0.7611
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G060100 [exp]	40.39	0.7499	Pt-EMB101.2
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.012G069300 [exp]	41.43	0.7430	ATHVA22.1
AT4G10590		UBP10	ubiquitin-specific protease 10...		Potri.016G067400 [exp]	42.66	0.7575
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	42.84	0.7289
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	45.82	0.7295
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.009G119650 [exp]	46.43	0.7504
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	48.16	0.7284

Compare expression of checked genes

Potri.008G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.