Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 1101 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 1056 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 918 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 520 / 2e-170 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 283 / 3e-80 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 275 / 2e-78 ERL1 ERECTA-like 1 (.1.2) AT2G26330 266 / 4e-75 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 266 / 1e-74 BRL3 BRI1-like 3 (.1) AT1G52290 254 / 1e-74 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT5G38560 257 / 5e-74 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103000 [exp] 1513 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 1149 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1139 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 821 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 793 / 0 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 793 / 0 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 771 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 761 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 758 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 1142 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1137 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 1048 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 1024 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 1008 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 1005 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 949 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 745 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 736 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10001851 [exp] 638 / 0 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G137801.3 pacid=42807454 polypeptide=Potri.008G137801.3.p locus=Potri.008G137801 ID=Potri.008G137801.3.v4.1 annot-version=v4.1 ATGGGTGTTTGGCTTTTTATCCATACCTCACTCCTTCTTTCCCTGCTATGCATTGCCCATTCTCAGCAAAACGACGACGCAGCAGTCATGCTGAAACTGA GAGACAGCCTTGTCAAATCGTCTACTCTCGGGTGGTCTGCCTCTGACCCATGTCAATGGGCCCACGTGGGTTGCACAAATAATCGGGTAGATCGTATCCA GATAGGCTACCAGAATTTACAAGGTACACTCCCCCCAGAACTCAGAAACCTGACTCAGTTAACTAGGTTCGAGGTCATGTCCAACAATTTAACGGGATCA TTACCGAGTTTGTCAGGGTTAAGCTCTCTCCAAGTCCTCCTTTTACACACCAACAATTTCTCTTCAATTCCTCCTGATTTTTTCACCGGAATGACGTCGT TAACCTCCGTCAGTTTGGATACAAATCCCTTTGAATCATGGGAAATACCGGAGAGTCTAAAAGATGCGACTTCTTTGAAGGAATTCTCGGCGAATGATGC TAATGTAGCTGGCAAAATCCCTGAATTTTTTAACAACGATGTGTTTCCTGGATTGGAAAGTTTGCATTTAGCTTTCAATTATTTAGAGGGTGAATTGCCT CTGAATTTTTCGGGGTCTACTATACGGTCTTTGTGGCTTAATGGCCAGAAGAGTAATTCCAGGCTAAATGGCACTCTTTCTATCTTGCAAAACATGACTT CATTGACTGAAATTTGGCTCCATGGAAATTCTCTTACGGGCCCTTTGCCTGATCTTTCTGGGATGATTTCATTGGAAGATTTGAGTTTAAGGGATAATAG CTTGACGGGTGTTGTTCCTCCATCATTAGTGAACATTTCTACACTTCGTGCAGTCAATTTCACTAATAATAAGCTCCAGGGACCGACGCCCAAGTTTGCT GATAGAGTTTCTGTGGATATGAATCCTGGGACTAATAATTTTTGTTTGGATAAACCTGGTGTTGCTTGTGATGCTACTGTCGATGTTTTGTTGTCAGTTG CGAAAAATTTTGGATACCCTGCTAGTCTTGCTGACTTTTGGAAAGGAAATGATCCTTGCAGTTCCAATAGTTGGAAAGGGATTGCTTGTGTTGGAAAGGA TATTTTGGTTATTAACTTGAAGAAAGCAGGACTTACTGGTACCATTTCTTCAGATTTTTTTTTGATTTCGACATTGCAGGAATTGTTTCTTTCTGATAAC ATGCTCACTGGTACGATACCAGATGAGCTTACAAATTTGTCTGATCTTACTATTTTAGATGTTTCGAATAATAGACTCTATGGTAACATCCCTAAGTTTA GAAATAATGTGCAAGTGGAATATGCTGGAAATCCTGATATTGGGAAGAATGGCAGTGTCTATCCTCCCCCTGCGACTCCCGGAACTGCACCTGGCTCACC TTCTGGTACAGTTGGCGATTCTGATGGTAGTGGGAACAAGAATTTGGCTACTGGAAAGATTGTGGGTTCTGTGATTGGTTTTGTTTGTGGTTTATGTATG GTTGGGCTAGGTGTATTCTTTTATAATAGGAAACAAAAGCGATCTAGTAAGGTTCAGAGTCCAAATATGATGATTATTCACCCCCGCCATTCAGGAGATC AGGATGCGGTGAAAATCACTGTTGCTGGATCAAGTGCAAATATTGGAGCTGAGAGCTTCACTGATAGTGTTGGACCCAGTGACATTAATCTGGCCAGGAC TGAAAATATGGTGATCTCGATTCAAGTTTTAAGAAATGTTACGAATAATTTTAGTGAAGAAAATATATTGGGAAGAGGTGGCTTTGGGACTGTATACAAG GGGGAATTGCATGATGGGACAAAAATTGCAGTGAAGAGGATGGAGTCAGGAGTGGTTAGTGAGAAAGGTCTTGCAGAGTTCATGTCTGAGATTGCGGTGC TTACTAAGGTTCGACATCGCCATCTAGTCGCCCTTATAGGATATTGCTTGGATGGAAATGAGAGGCTTCTTGTTTATGAATATATGCCTCAGGGGACACT TAGCAGGCATCTTTTTTGTTGGAAGGAGGAGGGTGTCAAATCACTAGAATGGACTAGAAGATTAACTATTGGCTTGGATGTTGCTAGAGGCGTTGAATAC CTACATGGGCTAGCACATCAATGTTTTATTCATAGGGATCTCAAACCTTCCAATATTCTTCTAGGAGATGATATGCGAGCCAAAGTGGCTGATTTTGGAT TGGTTCGTCCTGCTCCAGAAGGAAAAACTTCGATTGAAACCAGACTAGCTGGAACTTTTGGATATCTTGCCCCCGAGTATGCGGTGACTGGTCGAGTGAC CACAAAGGTTGATGTGTTTAGCTTTGGAGTCATATTAATGGAGATGATCACAGGAAGAAAAGCACTTGACGAGACCCAACCTGAGGACAGCTTGCATCTT GTTACTTGGTTCCGTAGGATGCACATCAACAAAGACACGTTCCATAAGGCCATTGACCCAACTATTAATCTTGACGAGGAAACCCTCGGCAGCATTAGCA CCGTTGCAGAGTTAGCAGGCCATTGCACTGCAAGGGAGCCCTACCAAAGGCCAGACATGGGTCATGTGGTTAATGTTCTGTCATCTCTTACTGAGATTTG GAAAGCAGCAGAACCAGATTCTGATGATATGTATGGGATTGATTTTGAGACGCCCTTGCCTGAAGTACTCCTGAAGTGGCAGGCATTTGATGGAAGCAGC TCTTCATTTCTTCCCAGTGGGGATAATACCCAGACTAGTATACCTACTCGGCCATCTGGCTTTGCAGAGTCATTCACTTCGGCAGATGGGCGGTAG
AA sequence Show only first row Show all	>Potri.008G137801.3 pacid=42807454 polypeptide=Potri.008G137801.3.p locus=Potri.008G137801 ID=Potri.008G137801.3.v4.1 annot-version=v4.1 MGVWLFIHTSLLLSLLCIAHSQQNDDAAVMLKLRDSLVKSSTLGWSASDPCQWAHVGCTNNRVDRIQIGYQNLQGTLPPELRNLTQLTRFEVMSNNLTGS LPSLSGLSSLQVLLLHTNNFSSIPPDFFTGMTSLTSVSLDTNPFESWEIPESLKDATSLKEFSANDANVAGKIPEFFNNDVFPGLESLHLAFNYLEGELP LNFSGSTIRSLWLNGQKSNSRLNGTLSILQNMTSLTEIWLHGNSLTGPLPDLSGMISLEDLSLRDNSLTGVVPPSLVNISTLRAVNFTNNKLQGPTPKFA DRVSVDMNPGTNNFCLDKPGVACDATVDVLLSVAKNFGYPASLADFWKGNDPCSSNSWKGIACVGKDILVINLKKAGLTGTISSDFFLISTLQELFLSDN MLTGTIPDELTNLSDLTILDVSNNRLYGNIPKFRNNVQVEYAGNPDIGKNGSVYPPPATPGTAPGSPSGTVGDSDGSGNKNLATGKIVGSVIGFVCGLCM VGLGVFFYNRKQKRSSKVQSPNMMIIHPRHSGDQDAVKITVAGSSANIGAESFTDSVGPSDINLARTENMVISIQVLRNVTNNFSEENILGRGGFGTVYK GELHDGTKIAVKRMESGVVSEKGLAEFMSEIAVLTKVRHRHLVALIGYCLDGNERLLVYEYMPQGTLSRHLFCWKEEGVKSLEWTRRLTIGLDVARGVEY LHGLAHQCFIHRDLKPSNILLGDDMRAKVADFGLVRPAPEGKTSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEMITGRKALDETQPEDSLHL VTWFRRMHINKDTFHKAIDPTINLDEETLGSISTVAELAGHCTAREPYQRPDMGHVVNVLSSLTEIWKAAEPDSDDMYGIDFETPLPEVLLKWQAFDGSS SSFLPSGDNTQTSIPTRPSGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	0	1
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	1.41	0.8844
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	5.29	0.8139
AT4G22190			unknown protein		Potri.011G015500 [exp]	6.92	0.7903
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	8.83	0.8438
AT5G06470			Glutaredoxin family protein (....		Potri.016G067700 [exp]	10.19	0.7938
AT4G22190			unknown protein		Potri.006G282000 [exp]	13.19	0.7465
AT2G05810			ARM repeat superfamily protein...		Potri.002G224400 [exp]	14.49	0.7820
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	15.29	0.7934
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	19.82	0.8174
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	23.06	0.7378

Compare expression of checked genes

Potri.008G137801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.