Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRE1.2,PHK2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01830 1390 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 1013 / 0 AHK2 histidine kinase 2 (.1) AT1G27320 991 / 0 AHK3 histidine kinase 3 (.1) AT2G17820 160 / 7e-40 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 154 / 6e-38 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G66340 133 / 1e-31 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 134 / 2e-31 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 117 / 5e-27 ERS1 ethylene response sensor 1 (.1) AT3G04580 71 / 3e-12 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 61 / 5e-09 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102900 [exp] 1900 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 1012 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 981 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 958 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.007G056400 [exp] 157 / 7e-39 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 157 / 1e-38 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.006G270500 [exp] 150 / 1e-36 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.018G011400 [exp] 147 / 1e-35 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.003G032300 [exp] 128 / 4e-30 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028992 [exp] 1417 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 1407 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 1353 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 1349 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 978 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 961 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10015773 [exp] 954 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10037032 [exp] 758 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10026917 [exp] 214 / 5e-57 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10041891 [exp] 157 / 1e-38 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.008G137900.1 pacid=42808581 polypeptide=Potri.008G137900.1.p locus=Potri.008G137900 ID=Potri.008G137900.1.v4.1 annot-version=v4.1 ATGGCGTTAAAGATGCAGCAAAGCTACCACCACTCTGTGGCTGTTAAGGTGAATGATCAACAAATGGGGACCAAAAGAGGGTATACATTTATACAAGCCA ACAGGACTTGGCTTCCTAAAGTTTTGTTGCTTTGGGTCATGGCTATGGCACTTTTTAGTTTGACGATATACAATGGCATGGATGCGGATAATAGAGTGAG GAGGAAGGAAGTGTTGGGTAGCATGTGTGATCAAAGGGCAAGGATGTTGCAAGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCCCTAGCCATTCTT GTCTCCACTTTTCATTACTACAAGAACCCATCTGCAATTGACCAGGAAACCTTTGCTGAGTACACTGCCAGAACTGCATTTGAGAGGCCACTGTTGAGTG GCGTAGCCTATGCACGAAGAGTAATTGATTCAGAGAGGCACGAATTCGAGAGGCAACATGGGTGGACAATAAAGACAATGGAGAGAGAACCCTCACCCAT TCGAGATGAGTACGCTCCTGTAATATTTTCTCAAGAGACGGTCTCCTACATCGAGTCTCTTGACATGATGTCAGGGGAGGAGGACAGAGAAAACATACTG AGGGCTAGGGCTACAGGGAAAGCTGTTTTGACGAGCCCCTTTAGGTTACTAGGTTCTCATCACCTCGGTGTTGTGTTGACATTCCCTGTTTACAAGTCTA AGCTTCCTCCAAGCCCAACAGTGGCGCAGCGCATAGAAGCAACTGCTGGATACCTTGGTGGGGCCTTTGACATTGAGTCCCTTGTGGAGAATTTACTTGG ACAGCTTGCTGGGAATCAGGCAATTTTGGTGAATGTTTATGACATAACTAACTCTTCTGACCTTTTAATCATGTACGGTCACCAAAATCTAGATGGTGAC TTGTCTCTTTTGCATGAAAGCAAGCTTGATTTTGGAGATCCATTCAGAAAGCACCTGATGACATGCAGGTACCATGAGAAGGCACCCACTTCATGGACAG CACTCTCCACAGCTTTCTTATTCTTTGTTATCGGTTTATTAGTGGGTTACATCTTATATGGTGCAGCAATTCATATCGTAAAAGTTGAGGATGATTTCCA TGAAATGCAGGAGTTGAAAGTCCGGGCAGAAGCTGCTGATGTTGCTAAATCCCAGTTTCTAGCTACTGTATCTCATGAAATCAGAACACCTATGAATGGC GTCCTTGGCATGCTTGCTTTGCTGCTAGATACGGATTTAAGTTCAACCCAGAGGGATTATGCTCAAACTGCTCAAGTCTGTGGAAAGGCACTGATAGCTT TGATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAGCTGGAAGCTGTCCCATTCGATATTCGATCCATACTAGATGATGTCCTTTC TTTATTTTCTGAGAAGTCTAGAAACAAAGGTATTGAGCTGGCAGTCTTTGTTTCTGATAAAGTTCCAGAAATTGTTGTCGGCGATCCTGGGAGATTCAGA CAGATTATCACAAATCTGGTGGGCAACTCTGTTAAGTTCACTGAAAGAGGACATATATTCGTTAAAGTTCATCTATATGAAAATGCCAAGGCCATAACAG ATACAAAAGTGGACACTTGTTTAAATGGAGGATCCAATGAAAGCGTGCTTACATCAGGTTCCCAAAAGTTCAAAACCTTGAGTGGTTGTGAAGCAGCAGA TGATCAGAACAGTTGGGATGTGTTTAAGCATTTTTCTGATGAAGATTTCCGATTTGATGCTTCAATAAATGTAATGACCAACAATGAAGCTTCTGAGGAT GTTGGGTTGATGGTATGTGTGGAGGATACAGGAATCGGCATCCCCTTAAAAGCCCAGGGTCGTGTTTTCATGCCCTTTGTGCAGGCAGACAGTTCAACGT CCAGACAGTACGGAGGAACTGGAATTGGGTTGAGTATAAGTAAGTGTCTGGTTGAGCTCATGGGTGGTCAAATAAACTTTATTAGCCGGCCTGAGGTTGG AAGCACATTTTCATTCACTGCTGTTTTCGGTACATGCAAGAAAAATACATTCAACAATATGGAAAAACGCAATGCTGAAGAATTGCCTTCTGGCTTTAGA GGATTGAAAGCATTGGTTGTTGATGGAAACCCAGTTAGGGCTACTGTAACCAGATACCATTTGAAGAGGCTTGGTATCCTAGCTGAAGTTGTAAGTAGCC TCAAGCTGGCTGCCATTGGCTGTGGGAAAAATGGTTCTCTGACATCAGGCAGAGGTAAAATCCACCCAGATATAATTCTAGTGGAGAAGGATTCATGGAT TTCTGGGGAGGATGGTGTTTCAAGTGTTTGGCAACTGGATTCGAAACAGAATGGACATGCATTCAAGCTTCCTAAGATGATCCTTCTTGCTACCAACATT ACCAATTCTGAATTTGATATAGCGAAGGGAGCAGGTTTTGCCGATACTGTGATCTTGAAACCTTTGAGATCTAGTATGGTGGCTGCATGTCTTCTGCAGG TGCTGGGCATGGGGAAGAAAAGGTCCCAAGGGAAAGGCATGCCCAATGGGTCTTCTTTCCTTCAGAGCCTTCTCTGTGGAAAGAGAATTCTGGTGGTTGA TGACAATAGGGTAAACCGCAGAGTTGCTGCAGGTGCCTTAAAGAAGTTTGGAGCTGATGCTGAGTGTGCTGAAAGTGGTAAAGAAGCATTGAAACTGCTT CAACCACCGCACACTTATGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAGGCAACTCGTCGAATCCGGCAGATGGAGAGCCAGG CAAACGAGCAGATGAATGGTGAATCCATGGTGGAAGAAGGAACAGCTAGAAAAGTCCAGTGGCATATTCCAATTTTAGCCATGACAGCTGATGTGATACA TGCTACACATGATGAGTGCTTGAAGAGTGGGATGGATGGATATGTCTCAAAGCCTTTCGAGGAAGAAAATCTCTATCAGGCAGTTGCCAGGTTCTTTGAT ACCAAATCCACTTTGAAGTCATAA
AA sequence Show only first row Show all	>Potri.008G137900.1 pacid=42808581 polypeptide=Potri.008G137900.1.p locus=Potri.008G137900 ID=Potri.008G137900.1.v4.1 annot-version=v4.1 MALKMQQSYHHSVAVKVNDQQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGMDADNRVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAIL VSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYARRVIDSERHEFERQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENIL RARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGD LSLLHESKLDFGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG VLGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFR QIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLSGCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASED VGLMVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSGFR GLKALVVDGNPVRATVTRYHLKRLGILAEVVSSLKLAAIGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHAFKLPKMILLATNI TNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLL QPPHTYDACFMDIQMPEMDGFEATRRIRQMESQANEQMNGESMVEEGTARKVQWHIPILAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVARFFD TKSTLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.008G137900 [exp]	0	1	CRE1.2,PHK2
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Potri.014G130800 [exp]	10.19	0.8823
AT1G31040			PLATZ transcription factor fam...		Potri.001G159200 [exp]	12.04	0.8765
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	13.11	0.9276	Pt-APETALA3.1
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281800 [exp]	15.42	0.9232
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	21.90	0.8868
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	35.07	0.9122
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.006G236200 [exp]	35.84	0.9126
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.002G079000 [exp]	39.59	0.9098	Pt-MADS2.1
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	43.95	0.8995
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	46.73	0.8700

Compare expression of checked genes

Potri.008G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.