Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14740 730 / 0 Protein of unknown function (DUF1423) (.1) AT3G63500 338 / 8e-103 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 256 / 2e-75 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 253 / 2e-74 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 51 / 3e-06 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 45 / 0.0001 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102600 [exp] 1338 / 0 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 372 / 4e-113 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 369 / 7e-112 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 269 / 2e-80 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 266 / 4e-79 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.006G158676 [exp] 47 / 4e-05 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G076500 [exp] 47 / 6e-05 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013248 [exp] 547 / 0 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030770 [exp] 461 / 1e-157 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10016399 [exp] 359 / 3e-108 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 314 / 1e-91 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10012327 [exp] 273 / 1e-81 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 271 / 8e-81 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030771 [exp] 164 / 9e-45 AT1G14740 139 / 1e-36 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 147 / 8e-41 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10028170 [exp] 50 / 7e-06 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 49 / 1e-05 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein CL0390 [poplar] [flax] PF16312 [poplar] [flax] Oberon_cc Coiled-coil region of Oberon
Representative CDS sequence Show only first row Show all	>Potri.008G138100.1 pacid=42807182 polypeptide=Potri.008G138100.1.p locus=Potri.008G138100 ID=Potri.008G138100.1.v4.1 annot-version=v4.1 ATGTATGGAGAGAAAGATCATCGTGCCTCTAATGGTGAGGTTGAGTCTGAGAGGTCTCTAAACAAAGAGAACCCTGTAGAGAAAATGATTGGTTTGTCTC GAAAGGGAATTGATTTTCTCAGAGAATCAAAGATGGGTTTTGAGGGGTTTGGCTTAAAACCCCAAGAACTCACTCTCAGCTACCTCTGTGAGAACAACAA CAATAATCCCAAACTGGGTTTTTCTCTCAAGGGAAAAGAAGTAATCTTTTCAGAGCTTTCTATCCAAGATGAGAAATGGGTTGAGAGGGATTTCTTGAAT CTGAGCGAAACCAAATCCAATTCTTCTTCCAAGAGACAAGTCCGCCACGAAGAAGATGAGGAAGAAGTTGAAGAGAATTCCTCAAGAGACAAGAAACAAA AGCTAGGGAGGACTTTAAATCTTTCTTTAGCTTTGCCAGATGTGTCTCTCTCTTTAACCGCATCAAATGCATTGCAAAATGTTGATCCTCTGATTGAGCC AAATCGTAATGAGTCCTTAGGTACGGCGGCGGCGGCGGCGGCAGCAGAAACACAATCCAAAAATAACAACACAAAAACTACATGTTCTAATGATTTCACT GCTGCTTCACTTTCTTATTCGTATTCACACCCGTTTTCACACAATCCTAGTTGCTCTATGACTCTCAATTCAACTGAGAATTACGAGTATTCTGTAGGGA GAGATGATCAAATTTGGTGTGGAGGGGAAGGGACTAATGGATCAGTTCATAGCCGGTTTAGGCCTATTGGAGATGGGATTGTTGCTTTGAACAATAACAA TCATGGTGGTGGTGGTTCTATAATGCAAGGTAATCGTGCAACGAATAAGGATTCGTGCAATAATAGTGTCTATAAAACTACTAGTTCGGATAATCTTTCA TTTTTTCCATCTGAATTGCCGGCTAGGCCACGCTTAGATGCTTATTCAGGTGATTCTAGGAGAAGGGATTCAGAGAATTTGAGAGGTTTGGAGAGTGGAG ATGGAGAAGGTGAAGCAAAAAAGCTGTCTAGACCAGGGAGAATTCTTCGTGAGATTGTTTCTGAGTCCATTCCTGTTATGGCTCAGATAATTCAGGAGGT AGCCGAAGAAACATTGGAATTGACGAAGGAGTACTTGAAGAATCTAATTGCTACGACTGAAAAGAGAGACGAGTTAGTTGGCCTTCAAAACCGGCTTCAG AGAAGGTCTGATCTTACCAAGGAGGCTCTCTTAAAGTGCCAAAGGGAGCAGCTAGAAATATTAGTTGCGGTCAAAATGGGGCATGGAAGTTTTGTATCTG GGAAAGTTCGGGTTCCTACGAATGAGTTGGTGGAGATTTTCTTGTTTATGAGGTGTAGGAATGTGAATTGCAAGAGTATATTGCCTGTGGATGACTGTGA CTGTAAGTTTTGCTCGGGGAATAAGGGATTTTGCAGCTCGTGTATGTGTCCTGTCTGTATGAATTTTGATTGTGCTAGCAATACATGCAGTTGGGTTGGC TGTGATGTTTGCTCCCATTGGTGCCATGCTGCTTGTGGCACACAAAAGAATCTCATTAGACCTGGTCCTAGCTTGAGGGGACCATCAGGAACTAGGGAGA TGCAATTTCACTGCATTGGGTGCAATCATGCTTCTGAGATGTTTGGCTTTGTCAAGGATGTGTTTGTGTGCTGTGCAAAGGATTGGGGTCAAGAAACTCT GATAAAGGAGCTTGATTGTGTTAGGAAGATTTTCAAGGGAAGTGAGGATTTCAAAGGAAAGGAGTTGCATACTAAGGCTGAGGACTTGCTCTCCAAGCTT GAAAGAAAACTGATGTCTTCTAGAGAAGCCTGCAACGTCATTATACAGTTCTTCAACTATGCAGATGGTATGTCAGATTTTCCTGCTTCTGGTGTTTCTG CAAAAGAATTGATGCCAACAGAAGCTACCCATAGAAAAGATGCAGTACCTATGCTGCCAGCAACTTCTCTCACTCCAAAATATGCCATTTACAACATGGG CTCTTCAAGTGGAAGACGTGATTCACTACCAAATGATCTACACCGAAATGATCTCAAAGCTTCCCTCCTTGATGTCCTAAAACTTGAAAATGAGTTTCAG TTTGGGAAGTTATCGAAGAATGATGGCTTCAACAGCTTAGAAAGCATTGTGCAGATCAAAGAAGCTGAAGCAAGAATGTTCCAGAACAAGGCAGATGAAG CACAAAGAGAGGCCGAAGGTTACAGGCAGATGATTCGGGCAAAATCTGACAAATTAGAAGAAGAATATGCAGAGAAGCTGGCCAAAATGTGTTTTCAAGA TACAGAAGAAACACGGAGGAAGAAAATGGAGGAATTGAAGACTTTGGAAAATACATATTGTAATTACTTCAACATGAAGCTGAGAATGCAAGCAGAGATT GCTGGTTTATTGGAAAGAATGGAGGCCACAAAGCAGCAATGGGTGTAA
AA sequence Show only first row Show all	>Potri.008G138100.1 pacid=42807182 polypeptide=Potri.008G138100.1.p locus=Potri.008G138100 ID=Potri.008G138100.1.v4.1 annot-version=v4.1 MYGEKDHRASNGEVESERSLNKENPVEKMIGLSRKGIDFLRESKMGFEGFGLKPQELTLSYLCENNNNNPKLGFSLKGKEVIFSELSIQDEKWVERDFLN LSETKSNSSSKRQVRHEEDEEEVEENSSRDKKQKLGRTLNLSLALPDVSLSLTASNALQNVDPLIEPNRNESLGTAAAAAAAETQSKNNNTKTTCSNDFT AASLSYSYSHPFSHNPSCSMTLNSTENYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGIVALNNNNHGGGGSIMQGNRATNKDSCNNSVYKTTSSDNLS FFPSELPARPRLDAYSGDSRRRDSENLRGLESGDGEGEAKKLSRPGRILREIVSESIPVMAQIIQEVAEETLELTKEYLKNLIATTEKRDELVGLQNRLQ RRSDLTKEALLKCQREQLEILVAVKMGHGSFVSGKVRVPTNELVEIFLFMRCRNVNCKSILPVDDCDCKFCSGNKGFCSSCMCPVCMNFDCASNTCSWVG CDVCSHWCHAACGTQKNLIRPGPSLRGPSGTREMQFHCIGCNHASEMFGFVKDVFVCCAKDWGQETLIKELDCVRKIFKGSEDFKGKELHTKAEDLLSKL ERKLMSSREACNVIIQFFNYADGMSDFPASGVSAKELMPTEATHRKDAVPMLPATSLTPKYAIYNMGSSSGRRDSLPNDLHRNDLKASLLDVLKLENEFQ FGKLSKNDGFNSLESIVQIKEAEARMFQNKADEAQREAEGYRQMIRAKSDKLEEEYAEKLAKMCFQDTEETRRKKMEELKTLENTYCNYFNMKLRMQAEI AGLLERMEATKQQWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	3.16	0.8604
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	5.38	0.8610
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004600 [exp]	8.36	0.8394
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	8.94	0.8363
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	9.48	0.8354
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	10.24	0.8382
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	11.48	0.8325	NAC146
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	12.00	0.8520
AT5G59830			unknown protein		Potri.009G027800 [exp]	12.48	0.8390
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	12.64	0.8353

Compare expression of checked genes

Potri.008G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.