Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35420 535 / 0 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 280 / 6e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 264 / 5e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 264 / 8e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 262 / 2e-86 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09490 257 / 2e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 255 / 2e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 253 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 248 / 7e-80 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G09500 246 / 1e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120200 [exp] 287 / 4e-96 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G256400 [exp] 278 / 2e-92 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 275 / 2e-91 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G125400 [exp] 274 / 7e-91 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G057800 [exp] 272 / 8e-90 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 265 / 4e-87 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 255 / 3e-83 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G033600 [exp] 251 / 2e-81 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.001G046400 [exp] 248 / 3e-80 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006141 [exp] 498 / 6e-179 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10039595 [exp] 277 / 6e-92 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035016 [exp] 273 / 2e-90 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014363 [exp] 268 / 2e-88 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 267 / 4e-88 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 267 / 5e-88 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 261 / 1e-85 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 259 / 8e-85 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 258 / 3e-84 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10002302 [exp] 256 / 1e-83 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.008G138600.1 pacid=42807746 polypeptide=Potri.008G138600.1.p locus=Potri.008G138600 ID=Potri.008G138600.1.v4.1 annot-version=v4.1 ATGGATCAAATAAAAGGCAGAGTATGTGTCACCGGAGCTTCTGGTTATCTAGCTTCTTGGCTTGTCAAGAGACTTCTCTTGTCAGGATATCACGTCACTG GAACAGTTAGAGATCCAGAAAATGAGAAGAAAGTAGCGCATCTTTGGAGACTGGAAGGAGCGAAGGAGAGACTCCGATTGGTGAAGGCTGATCTAATGGA AGAGGGTAGCTTCGATGATGCAATCATGGAATGCCGTGGTGTCTTCCACACTGCTTCCCCTGTTCTCAAACCATCATCTGATCCAAAGGCAGAAATTTTG GAACCGGCTATCGAGGGCACGTTGAATGTACTCCGTTCCTGCAAGAGGAACCCGTCTCTAAAACGTGTGATTCTCACCTCATCCTCTTCGACCTTGCGAG TAAGAGATGATTTCGACTCCAACATACCTCTTGACGAGTCATCTTGGAGCTCTGTGGAACTCTGTGAGAGACTGCAGATATGGTATGCTCTGTCAAAAAC ACTTGCTGAGAAGGCAGCGTGGGAATTCTGCAATGGCAACGGCATTGATTTGATTACTGTTCTACCATCGTTCGTGATTGGACCTAGTTTGTCCCCTGAT TTATGTTCCACTGCAACTGATGTTCTTGGCTTACTTACAGGAGAATCGGAGAAATTTCATTGGCATGGAAGAATGGGTTATGTCCACATTGATGACGTGG CACTGAGCCACATCCTCGTTTACGAGGATGAAACTGCGGGGGGGCGATACCTTTGTAGCTCGATCGTGCTGGACAACGATGAATTAGCGTCCTTTCTATC ACAACGTTATCCTTCACTGCCTATCCCAAAGAGGTTTGAGCAACTAAGGAGACCGTACTACGAATTCAACACCTCAAGGTTGGAGAGATTAGGGTTCAAG TTCAAGCCAATCCAAGAAATGTTCGATGATTGCATTGCTTCGCTTGTGGAACAAGGCCATCTCTCTTCGTTCAGCCTGGCTATAAATTAA
AA sequence Show only first row Show all	>Potri.008G138600.1 pacid=42807746 polypeptide=Potri.008G138600.1.p locus=Potri.008G138600 ID=Potri.008G138600.1.v4.1 annot-version=v4.1 MDQIKGRVCVTGASGYLASWLVKRLLLSGYHVTGTVRDPENEKKVAHLWRLEGAKERLRLVKADLMEEGSFDDAIMECRGVFHTASPVLKPSSDPKAEIL EPAIEGTLNVLRSCKRNPSLKRVILTSSSSTLRVRDDFDSNIPLDESSWSSVELCERLQIWYALSKTLAEKAAWEFCNGNGIDLITVLPSFVIGPSLSPD LCSTATDVLGLLTGESEKFHWHGRMGYVHIDDVALSHILVYEDETAGGRYLCSSIVLDNDELASFLSQRYPSLPIPKRFEQLRRPYYEFNTSRLERLGFK FKPIQEMFDDCIASLVEQGHLSSFSLAIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Potri.008G138600 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Potri.012G095700 [exp]	3.46	0.8813
					Potri.002G259500 [exp]	4.24	0.9189
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.015G124601 [exp]	8.48	0.8272
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	11.13	0.8808
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184100 [exp]	11.83	0.8684
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	15.19	0.8668
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G186100 [exp]	17.88	0.8483
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114266 [exp]	18.97	0.8144
					Potri.004G074602 [exp]	19.39	0.7191
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183800 [exp]	19.44	0.8176

Compare expression of checked genes

Potri.008G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.