Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25220 404 / 1e-143 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 400 / 3e-142 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 386 / 2e-137 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 386 / 2e-137 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 386 / 2e-137 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 377 / 2e-133 Glutamine amidotransferase type 1 family protein (.1) AT2G28880 103 / 1e-24 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT3G27740 71 / 7e-14 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT1G63660 43 / 0.0002 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102200 [exp] 515 / 0 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G221500 [exp] 103 / 1e-24 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.003G080900 [exp] 72 / 5e-14 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 68 / 7e-13 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013241 [exp] 410 / 5e-146 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10030761 [exp] 403 / 1e-142 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10036525 [exp] 101 / 9e-24 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 99 / 4e-23 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10018639 [exp] 67 / 2e-12 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10039874 [exp] 66 / 6e-12 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10032268 [exp] 49 / 2e-06 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10024632 [exp] 47 / 9e-06 AT1G63660 909 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10014635 [exp] 42 / 0.0003 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF00117 [poplar] [flax] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Potri.008G138800.3 pacid=42805989 polypeptide=Potri.008G138800.3.p locus=Potri.008G138800 ID=Potri.008G138800.3.v4.1 annot-version=v4.1 ATGACCGCTGCTACAGCAAGTATGGTATCTCAAGCAGCTTTCAATCAATCAAAGCCCTCTCTTGCTCTCAAAACCCAGCTAGCCTTTTCTTCAAATCTCT TCTCTACACCTTCAAGTGTGAGTTTTAGGGCAAAGAGCCAAAAAGGGCTTGTAGTAAAATGTTCGATGGCAGCTGCAGAAACGAATTCCAGGGCTGCTGT TTCTAGTGACAAGGGAATCAAGAATCCCATAATTGTCATTGACAATTATGACAGTTTCACTTATAATCTGTGTCAGTACATGGGAGAGTTGGGCTGCCAC TTTGAGGTGTATCGGAATGACGAGTTAACTGTGGAGGATTTGAAAAGGAAAAAGCCAAGAGGCGTGCTCATATCCCCAGGCCCAGGAACGCCCCAAGATT CTGGAATATCATTGCAGACAGTTTTAGAGCTTGGACCTACCGTCCCTTTGTTTGGTGTGTGCATGGGGTTGCAGTGCATTGGAGAGGCTTTTGGAGGAAA AGTTGTGCGCTCACCTTATGGTGTCGTGCATGGGAAAGGTTCTCCTGTGTATTATGATGAGAAGGGAGAAGATGGCTTGTTTTCTGGGTTGTCAAATCCT TTCACTGCTGGAAGATACCATAGCCTTGTGATTGAAAAAGAAAGTTTCCCTAGTGAAGAATTAGAGGTCACAGCATGGACTGAGGATGGTCTCATAATGG CTGCTCGCCATAGAAAATACAAGCATCTTCAGGGGGTGCAGTTCCATCCAGAAAGCATCATAACATCTGAAGGCAAGATAATAGTTAGCAATTTCATCAA AATGATAGAGAGAAAAGAAGCTGAATCTGAGAGCTAG
AA sequence Show only first row Show all	>Potri.008G138800.3 pacid=42805989 polypeptide=Potri.008G138800.3.p locus=Potri.008G138800 ID=Potri.008G138800.3.v4.1 annot-version=v4.1 MTAATASMVSQAAFNQSKPSLALKTQLAFSSNLFSTPSSVSFRAKSQKGLVVKCSMAAAETNSRAAVSSDKGIKNPIIVIDNYDSFTYNLCQYMGELGCH FEVYRNDELTVEDLKRKKPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSPVYYDEKGEDGLFSGLSNP FTAGRYHSLVIEKESFPSEELEVTAWTEDGLIMAARHRKYKHLQGVQFHPESIITSEGKIIVSNFIKMIERKEAESES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Potri.008G138800 [exp]	0	1
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	21.90	0.7554
AT1G45000			AAA-type ATPase family protein...		Potri.009G120500 [exp]	28.14	0.7197
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.005G090000 [exp]	32.01	0.7054
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	38.70	0.7491	FDH1
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	42.35	0.7168
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	43.68	0.7433	SAG13.4
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	44.18	0.7465
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.005G215900 [exp]	45.23	0.7422
AT1G19310			RING/U-box superfamily protein...		Potri.014G040400 [exp]	50.91	0.6594
AT4G01900		PII, P11, GLB1	GLNB1 homolog (.1)		Potri.002G191300 [exp]	58.99	0.7070	Pt-GLB1.1

Compare expression of checked genes

Potri.008G138800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.