Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14710 424 / 2e-140 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G02940 187 / 4e-51 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 160 / 1e-42 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G17970 152 / 7e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 144 / 6e-37 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 127 / 7e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102100 [exp] 996 / 0 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.014G137700 [exp] 159 / 1e-41 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.005G114800 [exp] 132 / 2e-32 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 128 / 4e-31 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.002G210732 [exp] 77 / 2e-16 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027990 [exp] 209 / 1e-58 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 176 / 2e-47 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 168 / 1e-44 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 159 / 2e-41 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10041917 [exp] 140 / 3e-35 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028462 [exp] 137 / 3e-34 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 90 / 5e-20 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G138900.2 pacid=42805827 polypeptide=Potri.008G138901.1.p locus=Potri.008G138900 ID=Potri.008G138900.2.v4.1 annot-version=v4.1 ATGGCAATGCCACCAGGAAATGTGGTCATACCGGACAAAGTTCAGTTTCCTGCTGGTGCTGCCGGTGGCGGAGGTGGTGGAAATGAGATCCACCAGCACC AACTCCAAAGGCACCAGTGGTTCCCTGTCGACGAGCGCGACGGGTTTATCTCGTGGCTGAGGGGGGAATTCGCTGCTGCCAATGCGATTATTGATTCTCT CTGCCACCACCTGCGTGCCGTCGGGGAAGCTGGTGAGTATGATTTAGTTGTAGGGTGTATACAGCAGAGGAGGAGTAATTGGAATCATGTGCTGCATATG CAGCAGTACTTTTCGGTGGGGGAGGTTATTGTTGCATTGCAACAAGTTGTATTGAGGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATC ATCATCATCAGCAGAGGTTTTATTACGATCACGGTAAAGTTGGGGGAAGGGATTTTAAGAGATCTTCTAGTGCCGGGTTTAATAGAGGACATAGGGGGGG TGGTGGTGGTGGTGGTGGTGATGCAGTGAAAGAAGGGGTTAATTCTAGTGTAGAGAATCATAGTTTTAATGGAAATTCTTCGGAGAATATTAGGAGTGAG AAATTTGAGGAGGTAAAATCCGGTGGTGATGGTGGGAAATCTGACGATAAGAAAGCAGATGCTACTGCAAAATCACATACAGATAACCACAAGAATAGTT CGGGGAATGCACAAGGAACCTTTTCTGGAAATTCAGAAGCTGTGGCTGTTGATGATCGGTCTAGCCCCGAAGAGAGTGATTCACATCCTAGCAACAATCA GAATGAGAAGCAGAATCTTGCTATCACTCCAAAAACATTTGTTGCTGAGGAGAAGATAGATGGACAGATGGTTAATGTGGTTGATGGACTGAAATTGTAT GAAAACTTGCTTGATGGCTTGGAAGTTTCAAAGCTTGTTTCTTTGGTTAATGAGTTAAGAGCTACTGGGAGAAGAGGACAGTGTCAAGCAGGTCAGACAT ATATCCTCTCCAAAAGGCCCATGAAGGGACATGGAAGGGAGATGATACAATTGGGTCTTCCCATTGCAGATGCACCCGCAGAAGATGAAAATGCAACTGG GACCTCCAAAGAGCGGAGAGTAGAATCCATTCCTGCATTGCTGCAAGATGTAATCGAACATTTTGTTGCCATGCAAGTTATGACCATGAAGCCAGACTCT TGCATAATTGATATCTATAATGAGGGTGATCACTCCCAGCCTCACATGTGGCCTCCATGGTTTGGAAAGCCTGTTTCAGTTCTTTTCTTGACAGAATGTG AGCTGACTTTTGGGAAAGTAATTGATACCCTGCATCATGGGGATTATAAAGGGTCTCTCAAGCTTTCTGTTGCACCTGGATCCTTACTTGTGATGCAAGG GAAGTCATCAGATTTGGCCAAGCATGCAATCCCCATGATTAAAAAGCAACGGATGCTTGTTACCTTCACCAAGTCTCAACCAAAGAAACTTACATCTAAT GATGGCCCGCGGCTTCCTTCACACGCCGTAGCCCCATCTTCCCATTGGGGTCCACCGCCAAGCAGATCCCCGAATCATCTTCGTCATCCTGTGCCCAAGC ATTACGCAGCAATTCCAACAACTGGTGTACTGTTAGTGCCGCCTATTCGGCCTCAAATTCCACCTCCAAATGGTGTACAGCCACTCTTCATGACCACCCC AGTTGCAGCACCAATGCCATTCCCTGCACCAGTTCCCATCCCACCAGTTTCAACTGGATGGCCTACATCCTCTCCAAGGCATCCTTCGGCTCGCCTACCT GTCCCCATCCCCGGCACAGGTGTTTTCCTCCCTCCTCCAGGTTCCGGCAATGCATCATCTGCACTGCAGTTGTCGGCGACTGCTACTGAGATGAATTTTC CTACAGAGACAGAAAAGGAAAAGGAAAATGGACCAGGAAAGTCCAATCATGATACAAGTGCTTCTCCAAAAGAGAAATCTGCTGAAAAGACTCAAAGACA AGACTCCAATGGAGATGTGGATGGAATAGCTGTGAAAAAGGAAGAACAGCAAAGTGTTAGCCATACAGTAGCTGGCCAGTCAGCTGGAGCAGTGTAG
AA sequence Show only first row Show all	>Potri.008G138900.2 pacid=42805827 polypeptide=Potri.008G138901.1.p locus=Potri.008G138900 ID=Potri.008G138900.2.v4.1 annot-version=v4.1 MAMPPGNVVIPDKVQFPAGAAGGGGGGNEIHQHQLQRHQWFPVDERDGFISWLRGEFAAANAIIDSLCHHLRAVGEAGEYDLVVGCIQQRRSNWNHVLHM QQYFSVGEVIVALQQVVLRRQQQQQQQQQQQQNHHHQQRFYYDHGKVGGRDFKRSSSAGFNRGHRGGGGGGGGDAVKEGVNSSVENHSFNGNSSENIRSE KFEEVKSGGDGGKSDDKKADATAKSHTDNHKNSSGNAQGTFSGNSEAVAVDDRSSPEESDSHPSNNQNEKQNLAITPKTFVAEEKIDGQMVNVVDGLKLY ENLLDGLEVSKLVSLVNELRATGRRGQCQAGQTYILSKRPMKGHGREMIQLGLPIADAPAEDENATGTSKERRVESIPALLQDVIEHFVAMQVMTMKPDS CIIDIYNEGDHSQPHMWPPWFGKPVSVLFLTECELTFGKVIDTLHHGDYKGSLKLSVAPGSLLVMQGKSSDLAKHAIPMIKKQRMLVTFTKSQPKKLTSN DGPRLPSHAVAPSSHWGPPPSRSPNHLRHPVPKHYAAIPTTGVLLVPPIRPQIPPPNGVQPLFMTTPVAAPMPFPAPVPIPPVSTGWPTSSPRHPSARLP VPIPGTGVFLPPPGSGNASSALQLSATATEMNFPTETEKEKENGPGKSNHDTSASPKEKSAEKTQRQDSNGDVDGIAVKKEEQQSVSHTVAGQSAGAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	2.82	0.7550
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	7.93	0.7620	Pt-NAP57.2
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	8.36	0.7796
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	9.00	0.7359
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	11.18	0.7409
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	16.49	0.7368
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.004G072200 [exp]	23.23	0.6983
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.007G028400 [exp]	26.98	0.7218
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Potri.010G169600 [exp]	28.14	0.6689
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G189100 [exp]	32.12	0.6917

Compare expression of checked genes

Potri.008G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.