Plant FIBer expression Database

Potri.008G139000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68080 449 / 7e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034428
[exp]
450 / 2e-157 AT1G68080 380 / 5e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Lus10019134
[exp]
129 / 3e-35 AT1G68080 129 / 5e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF13661 2OG-FeII_Oxy_4 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence
>Potri.008G139000.1 pacid=42808782 polypeptide=Potri.008G139000.1.p locus=Potri.008G139000 ID=Potri.008G139000.1.v4.1 annot-version=v4.1
ATGCTTCCAAGCAGGGAGATGGGAGCAGGGAGCCTGGAGCCGCCGCGTCTCATCCTTCACAATTTCCTCACCAGCGAAGAATGCAAGGAATTGGAATTCA
TACACAAAAGCAACAGCACTGTTGGGTACAGGCCCAACGTGTTCTCCACCACTCTTTCCCATCTCATAGCCACCAATTCTTCTCCCTTTCTCATCCCTTT
TGTTCCCATCCGAGAGAGGCTGAAAGAAAAAGTTGAACACTTTTTTGGCTGCGAGTATGAGCTCTGCATCGAATTCACTGGCTTAATTAGCTGGTGTAGA
GGAGCTAGCATTGGATGGCACAGTGATGATAACAGGCCCTATCTCAAGCAACGGCACTTTACGGCAGTGTGTTATTTGAATAGCTATGGGAAGGATTTCA
AAGGCGGACTTTTTCACTTCCAGGATGGGGAACCAGCTACTCTTGTTCCCATGGCCGGAGATGTTGCCATATATACAGCTGACAGTTGCAATATTCATGC
TGTCGATGAGATAATTGAAGGAGAGAGACTTACGCTTACACTGTGGTTTAGCCGTGATAGTGCCCATGATGAGGATGCAAAACTCATTTCCCTTCTATCA
AAAAACATGCCTGAATTGAAGCTACCTATGCTGGCATCCAGCAATATGTACTGGTTTTCTCTGGATCCAGCATCCCACCAACAGTTAGGATTTGATATAT
GCTTGGCAAGAATGCATGTGCTTGGGTTTGATATTTGTTCTTGTCAAGCAGAAGGCTTGTTTTCAGATTCCACAGAACTACTAATGGAGCCACTGCAGTT
AGTAAGGGGAAATGAGTTGTTTAAGCAGGAGTTTGTCAACATTTTGCATGCACTTCAGGCGGTACAATTTCACCATTGGAAAGCTTCAGACCTGCCAGAT
GCTCAATCTGAAGTAGAACCTGGGGATGTGGTACGATTATCAAAATCACAGCAGGAAGTGGTTAGAAGCCTCAAATCTCAGTTCTTAAGGGATCATCAAG
TGGTTGAAATGATATTCAGTTGCGCCACTTGCAGCAGGAATCAGCAAAACTTTGACTGGGAAAGATTTTCAGCTGCAATTGCTGGCTTGGAAGACTATAC
CTGTAAATTACATAAAGAATTACTAATGAGCTTACCATACTGGAGAACTCACGGAATTATATCCGAATGTTCTTAG
AA sequence
>Potri.008G139000.1 pacid=42808782 polypeptide=Potri.008G139000.1.p locus=Potri.008G139000 ID=Potri.008G139000.1.v4.1 annot-version=v4.1
MLPSREMGAGSLEPPRLILHNFLTSEECKELEFIHKSNSTVGYRPNVFSTTLSHLIATNSSPFLIPFVPIRERLKEKVEHFFGCEYELCIEFTGLISWCR
GASIGWHSDDNRPYLKQRHFTAVCYLNSYGKDFKGGLFHFQDGEPATLVPMAGDVAIYTADSCNIHAVDEIIEGERLTLTLWFSRDSAHDEDAKLISLLS
KNMPELKLPMLASSNMYWFSLDPASHQQLGFDICLARMHVLGFDICSCQAEGLFSDSTELLMEPLQLVRGNELFKQEFVNILHALQAVQFHHWKASDLPD
AQSEVEPGDVVRLSKSQQEVVRSLKSQFLRDHQVVEMIFSCATCSRNQQNFDWERFSAAIAGLEDYTCKLHKELLMSLPYWRTHGIISECS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68080 2-oxoglutarate (2OG) and Fe(II... Potri.008G139000
[exp]
0 1
AT2G24120 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 31... Potri.006G181100
[exp]
14.00 0.7909
AT1G71490 Tetratricopeptide repeat (TPR)... Potri.019G074700
[exp]
15.16 0.7552
AT4G12750 Homeodomain-like transcription... Potri.014G173300
[exp]
23.02 0.7591
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.005G011000
[exp]
27.74 0.7362
AT2G24960 unknown protein Potri.006G265900
[exp]
35.24 0.7475
AT2G20790 clathrin adaptor complexes med... Potri.010G028600
[exp]
39.59 0.7153
AT1G10240 FAR1_related FRS11 FAR1-related sequence 11 (.1) Potri.004G227600
[exp]
42.90 0.7440
AT4G30890 UBP24 ubiquitin-specific protease 24... Potri.003G202800
[exp]
44.49 0.7349
AT4G19150 Ankyrin repeat family protein ... Potri.003G103400
[exp]
57.41 0.6827
AT5G07900 Mitochondrial transcription te... Potri.001G034600
[exp]
62.56 0.7256

Potri.008G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.