Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAP8.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14700 476 / 2e-169 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2) AT1G25230 462 / 2e-164 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G01890 458 / 1e-162 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2) AT3G17790 437 / 2e-154 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1) AT2G01880 420 / 8e-148 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031400 [exp] 457 / 2e-162 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1) Potri.010G101900 [exp] 453 / 1e-160 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1) Potri.015G031300 [exp] 449 / 2e-159 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2) Potri.012G042200 [exp] 447 / 1e-158 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031941 [exp] 445 / 1e-157 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2) Lus10019133 [exp] 427 / 1e-150 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2) Lus10035100 [exp] 432 / 4e-150 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2) Lus10034429 [exp] 423 / 2e-149 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.008G139100.1 pacid=42808299 polypeptide=Potri.008G139125.1.p locus=Potri.008G139100 ID=Potri.008G139100.1.v4.1 annot-version=v4.1 ATGCCTTCAACCAAAGCATACACTCTGTTTCTCTCCCCTTTGTTCTCACCTTCGCTCCCAGTACTGCATGCCATGTCTGGTCTTATGCTTCTGAGTCTCA TACCCACTGTTCTTTTAGGTTTCAGTGTTGTTCTCTCTGCAGCTGAGCTTCAGCGATTCGAACATGCTGCCAAAGCCGATGGATCTCTAAGCCTTCTGGT TGTTGGAGACTGGGGAAGAAGAGGAGCATATAACCAGACCGAAGTTGCTCTTCAGATGGGAATAATGGGAGAGAAATTGGACATTGATTTTATAATCTCA ACTGGAGATAATTTCTACGAAGGTGGATTAAACGGCGTGGATGATCCAGCTTTTTATGAGTCATTTACGAGAATTTATACAGCTCCTAGCCTGCAAAAGC AATGGTACAATGTTCTGGGAAACCATGACTACAGGGGTGATGTCGAGGCGCAATTGAGTCCAGTCCTTAGAGAAATGGATAGCAAATGGCTTTGCCTAAG ATCATTTATCGTCAACACCGAAATAGCTGAGTTTTTCTTCGTGGACACAACTCCTTTCGTCAACAAATACTTCCTCGAGCCAAAGGACCATGTGTATGAT TGGAGTGGCATATTACCGAGGAAGAGTTACCTTTCAAATGTCTTGGAGGATTTGGACATGGCACTGAAAGAATCCGTTGCAAAATGGAAGATTGTAGTTG GTCACCATACAATTAAGAGCGCCGGGCAACATGGTAACACCGTCGAGCTCAATTTACAACTCCTCCCGATCCTCCAGGCAAATAATGTTGATCTTTATAT AAACGGACATGACCATTGCTTGGAACACATAAGCAGCAGTGAAAGCCCGCTTCAATTCTTGACAAGTGGTGGTGGGTCAAAGGCATGGAGGGGCGACGTG GCCTGGTGGGATCCGAAGGAAATGAAGTTCTATTATGACGGGCAAGGTTTCATGTCGGTCCAAATTACTCAAACTGAAGTTGATGTTGTGTTCTATGATG TTTCTGGCGAAGTTCTGCACAAATGGAGCAGGACTAAACAGATATCCTCTGCAGTACTGTAG
AA sequence Show only first row Show all	>Potri.008G139100.1 pacid=42808299 polypeptide=Potri.008G139125.1.p locus=Potri.008G139100 ID=Potri.008G139100.1.v4.1 annot-version=v4.1 MPSTKAYTLFLSPLFSPSLPVLHAMSGLMLLSLIPTVLLGFSVVLSAAELQRFEHAAKADGSLSLLVVGDWGRRGAYNQTEVALQMGIMGEKLDIDFIIS TGDNFYEGGLNGVDDPAFYESFTRIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLREMDSKWLCLRSFIVNTEIAEFFFVDTTPFVNKYFLEPKDHVYD WSGILPRKSYLSNVLEDLDMALKESVAKWKIVVGHHTIKSAGQHGNTVELNLQLLPILQANNVDLYINGHDHCLEHISSSESPLQFLTSGGGSKAWRGDV AWWDPKEMKFYYDGQGFMSVQITQTEVDVVFYDVSGEVLHKWSRTKQISSAVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	0	1	Pt-PAP8.3
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	1.00	0.9555
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	2.00	0.9465
AT1G56320			unknown protein		Potri.005G019200 [exp]	4.89	0.9113
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G105900 [exp]	6.00	0.9220
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	7.14	0.8806
AT1G30700			FAD-binding Berberine family p...		Potri.001G462200 [exp]	7.74	0.8683
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	8.94	0.9001
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212000 [exp]	11.22	0.9011
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	11.40	0.8894
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	12.04	0.9120

Compare expression of checked genes

Potri.008G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.