Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ANN5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68090 363 / 3e-126 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT5G10230 204 / 7e-64 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 202 / 3e-63 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G65020 202 / 7e-63 ANNAT2 annexin 2 (.1.2) AT5G12380 189 / 3e-58 ANNAT8 annexin 8 (.1) AT1G35720 184 / 5e-56 ATOXY5, ANNAT1 annexin 1 (.1) AT2G38760 156 / 3e-45 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 99 / 8e-24 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101800 [exp] 535 / 0 AT1G68090 343 / 3e-117 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 352 / 1e-121 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 342 / 5e-118 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.007G092500 [exp] 202 / 3e-63 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 197 / 4e-61 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 193 / 1e-59 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.002G095600 [exp] 192 / 3e-59 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.001G024800 [exp] 185 / 2e-56 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.001G277500 [exp] 171 / 4e-51 AT5G12380 442 / 3e-157 annexin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031942 [exp] 376 / 3e-131 AT1G68090 353 / 2e-122 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10035101 [exp] 370 / 9e-129 AT1G68090 352 / 1e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10023530 [exp] 332 / 6e-114 AT1G68090 350 / 4e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10009225 [exp] 331 / 1e-113 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10037992 [exp] 293 / 4e-99 AT1G68090 321 / 6e-110 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10040415 [exp] 288 / 4e-97 AT1G68090 306 / 2e-104 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10008227 [exp] 195 / 4e-60 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 193 / 2e-59 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10019780 [exp] 191 / 1e-58 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 181 / 1e-54 AT2G38760 361 / 4e-125 annexin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [poplar] [flax] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Potri.008G139500.1 pacid=42808301 polypeptide=Potri.008G139500.1.p locus=Potri.008G139500 ID=Potri.008G139500.1.v4.1 annot-version=v4.1 ATGTCAACCTTCACAAAACCTTCAATGCAAAAATCTTCACGTGATGATGCCGAGCAACTAAACCGTGCTTTCAAAGGATTAGGCTGTGATGCTGCCGTTG TTGTCAATATTCTTGCACTTAGAAATGCATCTCAACGTGATAGCATTCAACAAGAATACGAGACCTTGTTCTCTGATGACCTCAAAAAACAATTGGCTCA TGAGCTTCATGGCCATCTCAAGAAAGCAGTTTTATTATGGATGAAAAGTCCTATAGAACGGGATGTTACAACATTGAGACAGGCTTTGACAGGACCTCTT TTTGATGTCAAAGCTGCCACTGAAATCATATGTACCCGCACTTCATCCCAGATTCGACAGATTAAGCAAGTTTACACTCCTACTTTTGGCACGCGACTTG AGTATGACATTGGGTGTCACACATCCGATGATCATAAAAAGTTGCTACTCGCATTTATAGCAATAACACGGTACGATGGCCCAGAAATTGATAGTGTGTT GGTAGAGGATGATGCTAAAGCTATCAACAAAATTGGGGTGAAGAAATCTGGAATGGATGAGAGCACTTTCATTCAGATTTTCACTGAAAGAAGCTCCGCA CATTTGATTGCCCTTGCTTCTGTTTACCATAAAATGTTTGGAAAGGAACTGAGAAAGACAATTAAAAGAGAAGCATCAGGGAATTTCAAGTATGCCCTTC TAACAATTTTGCAATATGCTGTTGATCCAACAAAGCACTATGCAACGGTGTTGCGCAAGGCAACGAAAGGTTTGGGTACAGACGATAGTACTCTAATCAG GATACTGGTTACGAGGGCAGAGATTGATTTGCAGAGGATCGAGGAAGAGTTCTTGAAGAAGTACAAAAGACCATTACCTGAAGTTGTTCATTCAGAGACA TCAGGTCACTACAGGGCCTTCCTTCTTTCCCTCTTAGGCTCTAAGTACTAG
AA sequence Show only first row Show all	>Potri.008G139500.1 pacid=42808301 polypeptide=Potri.008G139500.1.p locus=Potri.008G139500 ID=Potri.008G139500.1.v4.1 annot-version=v4.1 MSTFTKPSMQKSSRDDAEQLNRAFKGLGCDAAVVVNILALRNASQRDSIQQEYETLFSDDLKKQLAHELHGHLKKAVLLWMKSPIERDVTTLRQALTGPL FDVKAATEIICTRTSSQIRQIKQVYTPTFGTRLEYDIGCHTSDDHKKLLLAFIAITRYDGPEIDSVLVEDDAKAINKIGVKKSGMDESTFIQIFTERSSA HLIALASVYHKMFGKELRKTIKREASGNFKYALLTILQYAVDPTKHYATVLRKATKGLGTDDSTLIRILVTRAEIDLQRIEEEFLKKYKRPLPEVVHSET SGHYRAFLLSLLGSKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	0	1	Pt-ANN5.2
AT5G62170			unknown protein		Potri.012G132900 [exp]	2.00	0.7441
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	4.24	0.7422
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	9.16	0.7313
AT5G20045			unknown protein		Potri.008G015100 [exp]	13.89	0.6106
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	14.96	0.6849
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	19.28	0.6828
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	30.00	0.7248
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G169900 [exp]	40.98	0.6628
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	48.18	0.6693
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	54.69	0.6960

Compare expression of checked genes

Potri.008G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.