Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 521 / 0 DNAse I-like superfamily protein (.1) AT2G37440 345 / 1e-114 DNAse I-like superfamily protein (.1.2) AT2G32010 266 / 8e-83 CVL1 CVP2 like 1 (.1.2) AT1G05470 262 / 4e-81 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 256 / 1e-80 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 255 / 6e-80 DNAse I-like superfamily protein (.1.2) AT3G63240 251 / 1e-77 DNAse I-like superfamily protein (.1) AT1G34120 243 / 3e-74 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 231 / 4e-69 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 225 / 7e-67 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101700 [exp] 747 / 0 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 462 / 5e-161 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 453 / 3e-157 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 275 / 2e-87 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 263 / 6e-82 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.005G212700 [exp] 261 / 2e-81 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G247800 [exp] 258 / 8e-81 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G050000 [exp] 255 / 6e-79 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.007G090200 [exp] 255 / 6e-79 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031310 [exp] 329 / 3e-110 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10034857 [exp] 289 / 8e-93 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 288 / 4e-92 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 296 / 6e-90 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10025305 [exp] 281 / 4e-89 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 257 / 6e-82 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 259 / 8e-80 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 246 / 4e-79 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 251 / 2e-78 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 247 / 1e-75 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.008G139600.1 pacid=42808415 polypeptide=Potri.008G139600.1.p locus=Potri.008G139600 ID=Potri.008G139600.1.v4.1 annot-version=v4.1 ATGTGGCCAAGATTAGTAGTTAACAAGATCCTTGGAAATAGATTGAGCAACAACAACTTTGTGGCAGATTTTCCAGTTGACGCAAGAACCTGTAGCTTGC TGGATATTTCAAGCTTAGGCCAACCATCGTTGAGCGATAACACCATCCGCAATCAGCGCAAGGACAACTTCCACGACTACAATGTTTTCGTCAGCACATG GAATGTTGGCGGGATTGCACCACAGGAAGATTTGGATATTTCCGATTGGCTAGATACTCCCAATAATATTTGCGACATATACGTTTTTGGGTTTCAAGAG ATTGTGCCTCTAAGAGCATCAAATGTTTTAGGTTCTGAAAATAGTAAGATCTCAATGAAATGGAATTCATTGATTAGAGAAGCATTGAACAAGAAGATTC AGTATTGCCTAGAAAAACAGAAATACAACCACAAGCAGCTGGGTATAAGAACACAAAAAACCTCTTTCAACGAAGATGAAAAGGCAGTATTCGAAAGCAG CATTCCTGAAGACTTCCGGTGTGTCATTTGTAAACAAATGGTCGGGATATTAATATCAGTTTGGATTCGAAGTGATCTCCGTCCTTACGTCCGGCATCCT AGTGTTTCTTGTGTCGGCTGTGGCATCATGGGCCTAGGAAACAAGGGATCTGTGTCGGTTAGATTTCTGTTACATGAAACAAGCTTCTGCTTTGTGTGCA GTCATCTAGCTTCAGGAGGTAGAGAGGGAGATGAAAAGCTTAGAAATTCTGACGTAGCCGAAATATTTTCTCGAACAAGCTTCCATAGACGCCCTTCGCT TGATTTGCCGCGAAATATTCTAGATCATGACCGGGTAATTTTGCTTGGAGATTTGAACTATAGAGTTTCTCTACCAGAAGCAACAACTCGATTATTGGTG GATAGAAAAGAATGGAATGCATTGCTAGACAATGATCAGCTAAGGATGGGGCTCGTAAATGGACAAGTATTTGAAGGTTGGCATGAAGGACTTATCAAAT TTGCTCCCACTTACAAATATTGCCTGAAATCAAATGTATATTTTGGATGTGCTGAAGGCCAAAGAGGTGGAAAGTGGCGTGCCCCTGCATGGTGCGATCG GATTATTTGGCACGGGGAGGGGCTAAAGCAACATTTCTACACTAGAGGTGAGTCAAACTTGTCTGATCATAGACCAGTCAAGGCCATGTTTACTGCAGAA GTTCAGGTTTCAAGCACATTAAAAGGGCTTCAAAAATTCTTCCTTTCAGAGAGGTTTGATCATCAAATAACGACCACATATGAGATGCCATTATCCGATC GATATCCATGTAAGAGCAGATCAAGCTTCAAATTATAA
AA sequence Show only first row Show all	>Potri.008G139600.1 pacid=42808415 polypeptide=Potri.008G139600.1.p locus=Potri.008G139600 ID=Potri.008G139600.1.v4.1 annot-version=v4.1 MWPRLVVNKILGNRLSNNNFVADFPVDARTCSLLDISSLGQPSLSDNTIRNQRKDNFHDYNVFVSTWNVGGIAPQEDLDISDWLDTPNNICDIYVFGFQE IVPLRASNVLGSENSKISMKWNSLIREALNKKIQYCLEKQKYNHKQLGIRTQKTSFNEDEKAVFESSIPEDFRCVICKQMVGILISVWIRSDLRPYVRHP SVSCVGCGIMGLGNKGSVSVRFLLHETSFCFVCSHLASGGREGDEKLRNSDVAEIFSRTSFHRRPSLDLPRNILDHDRVILLGDLNYRVSLPEATTRLLV DRKEWNALLDNDQLRMGLVNGQVFEGWHEGLIKFAPTYKYCLKSNVYFGCAEGQRGGKWRAPAWCDRIIWHGEGLKQHFYTRGESNLSDHRPVKAMFTAE VQVSSTLKGLQKFFLSERFDHQITTTYEMPLSDRYPCKSRSSFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01900			DNAse I-like superfamily prote...		Potri.008G139600 [exp]	0	1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	1.00	0.9907	AOP1.1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	2.00	0.9894
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	3.00	0.9880
					Potri.001G405600 [exp]	4.00	0.9795
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	5.47	0.9794
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G030100 [exp]	7.41	0.9699	CYP76G5
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G175900 [exp]	7.74	0.9578
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	8.48	0.9720
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	9.16	0.9760
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	9.48	0.9718

Compare expression of checked genes

Potri.008G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.