Plant FIBer expression Database

Potri.008G139800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G380900
[exp]
42 / 5e-06 AT1G78540 592 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Potri.011G102100
[exp]
41 / 1e-05 AT1G78540 591 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G139800.1 pacid=42806241 polypeptide=Potri.008G139800.1.p locus=Potri.008G139800 ID=Potri.008G139800.1.v4.1 annot-version=v4.1
ATGCCGCCGATCTTGCTTTCTTTCTCTCCAACATATCGGGGTCATACGAGGTTCAGCAGGATTTTGAGCTCCCGAGGAAAATTTCTGGATGTCAGGAATA
GGTGGCCCAAGAAAAATTTGAGAAGATATGGCGTTGGGTTGTACCCTGCTGCTTTTACATCAACGAGCGATTCAATAAACACAGTATGGAGTTCTACATC
GCCATAG
AA sequence
>Potri.008G139800.1 pacid=42806241 polypeptide=Potri.008G139800.1.p locus=Potri.008G139800 ID=Potri.008G139800.1.v4.1 annot-version=v4.1
MPPILLSFSPTYRGHTRFSRILSSRGKFLDVRNRWPKKNLRRYGVGLYPAAFTSTSDSINTVWSSTSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.008G139800
[exp]
0 1
AT3G10630 UDP-Glycosyltransferase superf... Potri.008G018200
[exp]
12.12 0.8300
AT5G17900 microfibrillar-associated prot... Potri.013G065600
[exp]
12.96 0.8304
AT3G18020 Pentatricopeptide repeat (PPR)... Potri.015G039300
[exp]
13.96 0.8311
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Potri.001G350400
[exp]
18.65 0.8287
AT3G58590 Pentatricopeptide repeat (PPR)... Potri.019G091000
[exp]
19.10 0.8271
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.017G057100
[exp]
20.17 0.8203
AT1G21740 Protein of unknown function (D... Potri.005G070200
[exp]
22.00 0.7961
Potri.002G208200
[exp]
25.61 0.8225
Potri.001G354300
[exp]
29.73 0.8176
AT2G30120 unknown protein Potri.001G281400
[exp]
34.98 0.8193

Potri.008G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.