Plant FIBer expression Database

Potri.008G139900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68100 403 / 4e-137 IAR1 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042480
[exp]
334 / 4e-110 AT1G68100 328 / 7e-108 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Lus10026186
[exp]
328 / 3e-108 AT1G68100 329 / 5e-109 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02535 Zip ZIP Zinc transporter
Representative CDS sequence
>Potri.008G139900.1 pacid=42806901 polypeptide=Potri.008G139900.1.p locus=Potri.008G139900 ID=Potri.008G139900.1.v4.1 annot-version=v4.1
ATGGAGCCGAAACGGAAACGGATTCTGTTAGCTTTGTTCTTATTGCTCGTATCTTGCTCGGATCTATGTTTTGGCAATGAATTCTGTGCATCGCCAGTGC
ATCAACATTCCCATGGACACCATCACCACCATGATTGCGCTCACGGACACCAACACCACCACCACCATGAGCATAATCCTGGAGTGATTGAATCGAAGCT
GCCGGAGGAATTGGCCGAGGAGGAGGATATGAAACTCTACGGGTTTGGCAACCATGACCATGACCATGACCACCACCGCGGTTTGGAACTCTCTGGTTTA
GGTCTTTGGATACATGCGTTGGGCTGCTCACTTTTGGTGAGCTTGGCTTCCCTTATCTGCCTGATTTTCTTGCCAGTCATATTTATAAAAGGAAAACCAT
CCAAGGCAATTGTGGATTCGTTGGCTTTATTTGGGGCAGGAGCTATGTTAGGGGATGCATTTCTTCATCAATTACCACATGCATTTGGTGGCGAACACAC
CCACTCTGATGATCACCATGCAGACAATTTTCATCATGCTCATGCTGGAGATGAGCGTGGCCATGCACATTCACATTCTTTGAAAGATCTTTCTGTTGGA
ATATCTGTTTTGGCTGGTATTGTACTCTTTCTGCTTGTAGAGAAGGTGGTGAGGTATGTTGAAGACAATTCTACTGGAGCTAATGCTTGGAATCATGGCC
ATCACCATCACAATCACAACAGCAGCAAGAAACTGAAAGATGACGGTGATGCTCATGATAAGACACAGTCAAAATCTTCCAAGGAAGGTGATGGGAAAGG
GTCTGATGAAGTTTTGGATGATTCTTCAAATGATACTAATTTTACTCAAAGTGAATCTCTACTTCGGAAGAGAAAGACCGTGCAGGAGGGCAAGGATGAT
AAATCAGATGTTGATGCTGCAGATGGCTCTGCGAATAATATTAGATCATTGAATGAAAACGAACATACTCTGTCACCTTCAAATCTGGTGTTTGGTTATC
TTAATCTCATCTCTGATGGTGTTCACAATTTTACAGATGGAATGGCTCTTGGAAGTGCATTTTTGCTTTATGGATCTGTTGGTGGATGGTCTAGAACTCT
TTTTTTGCTTGCACATGAGCTTCCTCAAGAGATAGGAGATTTTGGTATTCTGGTAAGATCTGGTTTCAGTGCACCTAAAGCCCTTTTTTTCAACTTCCTC
TCAGCATTAGTGGCATTAGCAGGAACTGCGTTGGCTTTGCTCTGGGGACAAGACCCAGGACAGTCATCTTTGATTGAGGGATTCACTGCAGGCGGATTTG
TGTACATTGCTGTTGCTGGGGTCCTGGCAGAAATGAACAATAGCAAGACAACGCTGAGAAGTTCAGCAGTTCACATAACCTCGCTAGTGCTGGGGATGGC
TGTTGCCCTGTGCATCTCACTTGTGGAATGA
AA sequence
>Potri.008G139900.1 pacid=42806901 polypeptide=Potri.008G139900.1.p locus=Potri.008G139900 ID=Potri.008G139900.1.v4.1 annot-version=v4.1
MEPKRKRILLALFLLLVSCSDLCFGNEFCASPVHQHSHGHHHHHDCAHGHQHHHHHEHNPGVIESKLPEELAEEEDMKLYGFGNHDHDHDHHRGLELSGL
GLWIHALGCSLLVSLASLICLIFLPVIFIKGKPSKAIVDSLALFGAGAMLGDAFLHQLPHAFGGEHTHSDDHHADNFHHAHAGDERGHAHSHSLKDLSVG
ISVLAGIVLFLLVEKVVRYVEDNSTGANAWNHGHHHHNHNSSKKLKDDGDAHDKTQSKSSKEGDGKGSDEVLDDSSNDTNFTQSESLLRKRKTVQEGKDD
KSDVDAADGSANNIRSLNENEHTLSPSNLVFGYLNLISDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHELPQEIGDFGILVRSGFSAPKALFFNFL
SALVALAGTALALLWGQDPGQSSLIEGFTAGGFVYIAVAGVLAEMNNSKTTLRSSAVHITSLVLGMAVALCISLVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68100 IAR1 IAA-ALANINE RESISTANT 1, ZIP m... Potri.008G139900
[exp]
0 1
AT3G09410 Pectinacetylesterase family pr... Potri.006G084900
[exp]
8.60 0.8519
AT2G07360 SH3 domain-containing protein ... Potri.018G149400
[exp]
10.77 0.8447
AT5G57330 Galactose mutarotase-like supe... Potri.003G187300
[exp]
13.74 0.8237
AT1G73430 sec34-like family protein (.1.... Potri.010G138900
[exp]
14.96 0.8509
AT1G01510 AN ANGUSTIFOLIA, NAD(P)-binding R... Potri.014G089400
[exp]
15.58 0.8505
AT5G19080 RING/U-box superfamily protein... Potri.008G202700
[exp]
17.54 0.7942
AT4G24610 unknown protein Potri.002G104100
[exp]
33.67 0.7916
AT5G08390 Transducin/WD40 repeat-like su... Potri.010G255400
[exp]
40.63 0.8133
AT3G60740 TFCD, EMB133, C... TITAN 1, TUBULIN FOLDING COFAC... Potri.014G067400
[exp]
42.84 0.8181 Pt-TTN1.1
AT5G19780 TUA5 tubulin alpha-5 (.1) Potri.001G004600
[exp]
46.66 0.7973

Potri.008G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.