Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25240 410 / 1e-142 ENTH/VHS/GAT family protein (.1) AT1G68110 359 / 1e-122 ENTH/ANTH/VHS superfamily protein (.1) AT1G14686 263 / 1e-85 ENTH/ANTH/VHS superfamily protein (.1) AT2G01920 211 / 1e-65 ENTH/VHS/GAT family protein (.1) AT2G01600 108 / 9e-26 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 108 / 1e-25 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 104 / 2e-24 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 103 / 4e-24 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 102 / 1e-23 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 94 / 1e-20 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158600 [exp] 122 / 3e-30 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 119 / 4e-29 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 104 / 2e-24 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 102 / 2e-23 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 99 / 2e-22 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 98 / 5e-22 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 96 / 1e-21 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 94 / 1e-20 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 93 / 2e-20 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034431 [exp] 386 / 1e-132 AT1G68110 309 / 2e-102 ENTH/ANTH/VHS superfamily protein (.1) Lus10019132 [exp] 350 / 2e-120 AT1G25240 281 / 3e-93 ENTH/VHS/GAT family protein (.1) Lus10035340 [exp] 119 / 7e-29 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 102 / 2e-23 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 102 / 2e-23 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 102 / 3e-23 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 101 / 3e-23 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 101 / 3e-23 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 97 / 8e-22 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 97 / 2e-21 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.008G140100.1 pacid=42808553 polypeptide=Potri.008G140100.1.p locus=Potri.008G140100 ID=Potri.008G140100.1.v4.1 annot-version=v4.1 ATGAAGCTGTGGAGAAGGGCTTCCGGAGCTCTAAAAGATCAAAACAGCTTATTAGCCATCAGCCTATCAAGGCAAACTTGGTATCGGAATTCAGATCTCG AGGCTGCAATCATCAAGGCCACCAGTCATGATGAGAGCTACGTAGATTACAGGAATGCCCAGAGAGTCTTTACATGGATACGCACATCTCCGGTGAGCCT GAAGCCCTTGATATGGGCTCTCACTACACGGATGGAGAAGACAAGGAGCTGGGTTGTGGCCATAAAGGGGTTGATGCTAATGCATGGTGTTTTCTGTTGT AAGACCCCAGCCGTGCAAAGGATCGGAAGGTTGCCATTTGATCTATCAAACTTCACTGATGGACACTCAAAACAAGCAAAAATGTGGGGCTTCAACACCT TTATTCGCTCTTATTTCTCGTTTTTAGACCAAAGATCTGCCTTGTTTTACGTACAACAGAATCAGACAGAAGAACCAATGGTGCAGGAGCTTGTAAAGTT GAGAAACTGGCAATCTTTGCTTGACATGTTGCTCCAAATTAAGCCAATGGCAGATAACATGAAAGAGGTTCTAATTACAGAGGCCATGGATTGTGTGATC ATTGAAATATTCGATGTTTACGGCAGGATATGCAAAGGGATTGCAAGGGTTCTCATGGGGATATATTCAGCTGGGAAACTTGAAGCTACCATGGCTTTTA AGATTCTTCAAAAGGCAAAAGTTCAAGGTGAGGACCTTGCTCTATATTTTGAATTTTGCAGGAACTTCGGTGTCTTCAACGCATTGGAAGTTCCTAAAGT CACACAGATCCCAGAAGCAGATATCAAAGATCTTGAGCGTATAATCAACGGAGTTCCTGAAGCGAAAAGTTACAAAAATGTTAATGATGAGGATGATAAT AAAGCAATAGTGGTGAAAGAAGATGTTGCCATTGTTGAAGAGAAAGAACCAAACAGTAGATTGAAGACAATAGTAACAGACAAATGGGAGATTTTTGAGG AAGACGTGAACATCAATTCTCAAGGAAATCACGAGACCTCTCATTTCAGAGCAACTTCTTCCGCAGAGAATCCTCCAAATTATCTACCCATTGTACCTGT TTATCATGAACAAGAGATACCGGATTTTATTTGTTTCTATTAG
AA sequence Show only first row Show all	>Potri.008G140100.1 pacid=42808553 polypeptide=Potri.008G140100.1.p locus=Potri.008G140100 ID=Potri.008G140100.1.v4.1 annot-version=v4.1 MKLWRRASGALKDQNSLLAISLSRQTWYRNSDLEAAIIKATSHDESYVDYRNAQRVFTWIRTSPVSLKPLIWALTTRMEKTRSWVVAIKGLMLMHGVFCC KTPAVQRIGRLPFDLSNFTDGHSKQAKMWGFNTFIRSYFSFLDQRSALFYVQQNQTEEPMVQELVKLRNWQSLLDMLLQIKPMADNMKEVLITEAMDCVI IEIFDVYGRICKGIARVLMGIYSAGKLEATMAFKILQKAKVQGEDLALYFEFCRNFGVFNALEVPKVTQIPEADIKDLERIINGVPEAKSYKNVNDEDDN KAIVVKEDVAIVEEKEPNSRLKTIVTDKWEIFEEDVNINSQGNHETSHFRATSSAENPPNYLPIVPVYHEQEIPDFICFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25240			ENTH/VHS/GAT family protein (....		Potri.008G140100 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	9.16	0.7150
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.010G056100 [exp]	11.66	0.6602
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.008G178700 [exp]	12.24	0.7032
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	28.98	0.6924	FAH1.2
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.004G010100 [exp]	38.26	0.6846
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	55.09	0.6778
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	65.38	0.6594
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.010G183300 [exp]	69.64	0.6447
AT5G26330			Cupredoxin superfamily protein...		Potri.009G136200 [exp]	77.95	0.6021
AT2G41050			PQ-loop repeat family protein ...		Potri.006G025100 [exp]	78.58	0.5695

Compare expression of checked genes

Potri.008G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.