Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68130 436 / 1e-151 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 364 / 2e-124 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT2G01940 338 / 6e-113 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT5G66730 238 / 3e-73 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 236 / 4e-73 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT2G02080 235 / 5e-72 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G03840 233 / 2e-71 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G03150 232 / 6e-71 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 229 / 2e-70 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT1G55110 229 / 3e-70 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101200 [exp] 697 / 0 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.015G033100 [exp] 514 / 0 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 507 / 4e-179 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.013G019200 [exp] 245 / 5e-76 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 244 / 2e-75 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.005G027200 [exp] 243 / 4e-75 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 244 / 5e-75 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 241 / 3e-74 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 241 / 3e-74 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026369 [exp] 328 / 1e-109 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10031314 [exp] 330 / 2e-109 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10031882 [exp] 316 / 3e-106 AT2G01940 324 / 1e-109 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10010820 [exp] 239 / 2e-76 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 244 / 2e-75 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 235 / 3e-72 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 233 / 4e-71 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 232 / 4e-71 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 232 / 2e-70 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 239 / 3e-70 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G140400.1 pacid=42806992 polypeptide=Potri.008G140400.1.p locus=Potri.008G140400 ID=Potri.008G140400.1.v4.1 annot-version=v4.1 ATGCTCGACAGCACCACCACTTCAACTGCTCCATCTCCTTCCTCTGATCCCTTCACAACTTCCTTGGATAATGGGGTCACCAATAAAAGAAAAAGAAAAC CTGCAGGCACACCAGATCCAGATGCAGAGGTTGTATCTCTATCGCCCAGGACCCTACTAGAATCAGACAGATATGTCTGTGAGATCTGCAACCAAGGGTT TCAAAGAGACCAGAACCTTCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAGCTACTGAAAAGGGAGACACAAGAAGTGAAGAAGAGAGTTTATGTA TGCCCAGAGCCAAGCTGCTTACATCATGACCCTTGCCATGCTTTAGGAGATCTTGTTGGCATAAAGAAGCATTTTAGAAGGAAGCATAGTAATCACAAGC AGTGGGTTTGTGAGAAGTGTTCTAAGGGTTACGCGGTTCAGTCTGATTACAAAGCTCACCTCAAGACTTGTGGCACAAGAGGTCATTCTTGTGACTGTGG CCGTGTCTTTTCCAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCACAGTAAGGGGAGCCCAGCCTGAACTACAGGCATTGCAGCCGGCCTGCTCA TCTAGAACTGCTTCAAGCACCAGCCCTTCAAGTGATGCCAATTTTAACATAGCACCCTTACCAGGGATACCAATGTCAAAGCCAACCGAACAAGTTTACT TGTGCTCGGATAGAAATGATGCGTCTACTTCTAGTCAGCAAGAACATAATCTTGAACTTCAGCTCTTACCATCTTCAAGCAATCACTTACCACAAAACCC TGACGAGCCTCATGCTGCGAATTTGAAGCTTTCAATAGGGTCAAGTGATCATAGTTGCGAAAAGGATGGATCAAACAAGGCCATTGGGGATCCGAGTTGG CATAAAAGCACCTCTAATGAGCCTGCATTCGAAGCAGCAAAGTTAAAGGAGTTTACAAATGAACAGTTGAGGTTGGCTATGACTGAAAAGGCCTATGCCG AGGAGGCTAGACAACAAGCAAAGAGGCAAATTGAGATGGCTGAACTGGAATTTGCAAATGCAAAGAGGATTAGGCAACAAGCTCAATCTGAACTTGAAAA GGCTCAACTTTTGAAAGAGCAAGCTACAAAGAAATTAAGTTCTACCATTATGCAAGTCACCTGCCAAGTTTGCAAGCAACAATTCCACGCATCAACTGCT GCTGCACCGGCAGACGAGACTTCTCTTGCTATGAGTTACATGTCCTCAGCAACTACTGAAGGAGATGGAGAATGA
AA sequence Show only first row Show all	>Potri.008G140400.1 pacid=42806992 polypeptide=Potri.008G140400.1.p locus=Potri.008G140400 ID=Potri.008G140400.1.v4.1 annot-version=v4.1 MLDSTTTSTAPSPSSDPFTTSLDNGVTNKRKRKPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVYV CPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRGAQPELQALQPACS SRTASSTSPSSDANFNIAPLPGIPMSKPTEQVYLCSDRNDASTSSQQEHNLELQLLPSSSNHLPQNPDEPHAANLKLSIGSSDHSCEKDGSNKAIGDPSW HKSTSNEPAFEAAKLKEFTNEQLRLAMTEKAYAEEARQQAKRQIEMAELEFANAKRIRQQAQSELEKAQLLKEQATKKLSSTIMQVTCQVCKQQFHASTA AAPADETSLAMSYMSSATTEGDGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	0	1
AT3G52910	GRF	ATGRF4	growth-regulating factor 4 (.1...		Potri.006G115200 [exp]	2.44	0.8501
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Potri.004G133600 [exp]	5.65	0.8452
					Potri.017G152701 [exp]	6.48	0.8454
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	8.77	0.8222
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.010G101200 [exp]	10.58	0.7474
AT1G72300			Leucine-rich receptor-like pro...		Potri.001G161000 [exp]	11.83	0.8154
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	11.83	0.7944
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	11.95	0.8042	Pt-NPH4.2
					Potri.002G115501 [exp]	13.96	0.8322
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.009G093300 [exp]	17.54	0.7717

Compare expression of checked genes

Potri.008G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.