Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01950 1537 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 984 / 0 BRL1 BRI1 like (.1.2) AT3G13380 964 / 0 BRL3 BRI1-like 3 (.1) AT4G39400 857 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 588 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 505 / 2e-160 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 496 / 2e-155 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 487 / 2e-153 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 475 / 5e-150 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 478 / 2e-148 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101100 [exp] 1986 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G472900 [exp] 955 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 951 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.005G086500 [exp] 833 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 833 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 570 / 0 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 557 / 5e-178 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G139700 [exp] 484 / 3e-152 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 479 / 2e-150 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039132 [exp] 1622 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038726 [exp] 1608 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10033533 [exp] 893 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 889 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 881 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 879 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 541 / 5e-172 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 516 / 7e-163 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10016395 [exp] 491 / 7e-155 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 483 / 3e-152 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G140500.1 pacid=42808770 polypeptide=Potri.008G140500.1.p locus=Potri.008G140500 ID=Potri.008G140500.1.v4.1 annot-version=v4.1 ATGGAGAGTAACCCGGTTCAGCTTTTCCATCATCTTGCACTTGCACTCCTTCTCTTCGTGTTTTCTGTTTCGGTTTCCGTGACCGAGCAGGGTCCCGTTC CATCGATAAGGACCGATGCTGCAGCCCTTCTTTCATTCAAGAAGATTATTCAAAATGACCCAAATAGAGTTTTATCAGGGTGGCAGATTAATCGAAGTCC ATGCAACTGGTATGGTGTCTCTTGCACTCTTGGAAGAGTCACTCATCTTGATCTTAGTGGAAGTTCTCTTGCTGGGACCATCTCTTTTGATCCTTTATCT TCTCTTGACATGTTATCTGCTCTGAATTTATCTTCGAATCCGTTTACTGTAAATTCCACCTCTTTGCTTCACCTCCCATACGCACTGCAACAGCTTCAGT TATCTTCTACTGGACTTGAAGGTCCGGTTCCTGAGAAATTTTTCTCCAAGAACCCGAATCTTGTTTACGTAAACCTTTCTCATAATAATTTATCGTCATT ACCAGATGATCTCTTATTGAACTCTGATAAAGTTCAGGCACTTGACCTTTCTTATAACAATTTTACAGGGTCCATTTCAGGTTCGAGAGTTGAGAATTCC TGCAACTCCTTGTCGCAACTTGATCTATCGGGAAACTTTTTAATGGACTCCATTCCTCCTTCACTTTCAAATTGTACAAATCTCAAAACTTTGAATCTTT CGTTCAATATGATCACAGGAGAGATCCCCAGGTCTCTAGGTGAACTGGGCAGTTTACAGAGATTGGATCTCTCTCACAATCATATCTCTGGTTGGATTCC TTCTGAGCTGGGAAATGCATGTAATTCACTTCTAGAACTTAAGCTTTCATATAACAACATTTCAGGCCCGATTCCTGTCTCCTTTTCCCCTTGTTCTTGG CTGCAAACTCTTGATTTGTCTAACAACAACATATCAGGGCCTTTTCCAGATTCTATCCTTCAAAATCTTGGTTCATTGGAGAGATTGCTGATAAGTTACA ACCTAATTTCTGGATTATTTCCAGCTTCAGTTTCTTCCTGCAAAAGCTTAAAAGTTTTGGATCTTAGTTCCAATAGATTTTCTGGTACCATTCCACCAGA TATATGCCCAGGTGCAGCCTCTCTTGAGGAGCTGAGATTGCCGGATAATCTCATTGAGGGAGAAATCCCAGCACAACTATCACAATGTTCCAAGCTGAAG ACGCTTGATCTCAGCATAAACTTCCTTAATGGATCGATCCCGGCTGAGCTTGGAAACCTCGAGAATCTGGAGCAGCTAATAGCATGGTATAATGGCCTGG AAGGGAAAATTCCACCGGAATTGGGCAAATGCAAGAATCTGAAGGATCTAATTCTCAATAACAACAACCTAAGCGGCATAATTCCAGTTGAATTATTCAG TTGCAGTAATCTTGAATGGATATCTCTCACAAGCAATCAATTCACAGGTAAAATCCCAAGAGAATTCGGCCTTCTGTCAAGGTTAGCGGTCTTGCAACTA GCGAACAATAGTTTGAGTGGAGAGATACCGACAGAACTAGGAAATTGCAGCAGCTTGGTTTGGTTGGACTTGAACAGCAACAAGCTCACTGGTGAAATCC CACCTCGACTTGGTCGGCAGCTGGGTGCAAAAGCATTGAGTGGAATTCTGTCCGGAAACACTTTGGTGTTTGTTCGGAATGTGGGGAATTCATGCAAAGG AGTTGGAGGTTTGCTGGAATTTGCTGGAATCAAAGCCGAAAGACTTTTGCAGGTACCAACTTTGAAGACTTGTGATTTCACAAGATTGTATTCAGGAGCA GTCCTGAGCCTTTTCACACAATATCAAACACTGGAGTATCTGGATCTGTCTTACAATGAGCTCCGAGGGAAAATTCCGGACGAAATTGGGGAAATGATGG CCCTCCAAGTTCTTGAATTAGCTCATAACCAGCTATCTGGAGAGATTCCCGCATCACTTGGCCAGCTCAAGAATTTGGGTGTGTTTGATGCATCGCATAA CAGATTGCAGGGTCAAATCCCAGATTCATTCTCAAATCTATCTTTCTTGGTGCAAATTGATCTTTCAAATAATGAATTAACAGGGGAAATCCCACAGAGG GGGCAGCTCAGTACACTTCCAGCAACCCAGTACGCAAACAATCCAGGACTCTGCGGGGTTCCACTGAACCCGTGTGGGAGCGGAAATAGTCACGCGGCAT CTAATCCAGCCCCAGATGGTGGCAGAGGAGGTAGAAAGAGTTCAGCTACATCGTGGGCTAATAGCATTGTCTTAGGGATCCTCATCTCCATTGCTTCCCT GTGCATTTTGGTTGTGTGGGCGGTAGCGATGCGTGTGAGGCATAAGGAAGCAGAGGAGGTCAAGATGCTTAATAGTCTGCAAGCATCTCATGCTGCTACA ACATGGAAGATTGACAAAGAGAAAGAACCATTAAGCATCAACGTTGCTACATTTCAGAGGCAGCTGAGGAAGCTCAAGTTTTCTCAGCTCATTGAGGCCA CCAATGGCTTCTCTGCAGCCAGCCTTATTGGGTGTGGTGGGTTTGGAGAGGTGTTTAAGGCCACATTGAAGGATGGTTCTAGTGTTGCAATCAAGAAACT GATAAGATTAAGCTGCCAGGGTGATCGAGAGTTCATGGCCGAAATGGAAACTCTAGGGAAGATAAAGCATAGGAACCTTGTTCCTCTTCTTGGATATTGC AAAATTGGTGAAGAGAGACTGCTTGTGTATGAATTCATGGAGTTTGGAAGTCTCGAGGAAATGCTACATGGAAGAGGAAGAGCACGAGACAGACCGATTC TAACTTGGGATGAAAGGAAAAAGATTGCCAGAGGTGCAGCCAAGGGACTTTGTTTTTTACACCACAATTGCATCCCGCACATTATTCACCGAGACATGAA GTCAAGCAATGTTCTGTTGGACCACGAAATGGAAGCAAGAGTTTCAGATTTTGGAATGGCAAGGCTCATAAGTGCACTTGACACACATCTTAGTGTAAGC ACACTAGCAGGAACGCCGGGGTATGTGCCGCCTGAGTACTACCAAAGTTTTCGGTGCACTGCAAAAGGAGATGTCTATTCGTTTGGTGTTGTACTACTGG AACTCCTGACGGGTAAACGCCCCACAGATAAAGAGGATTTTGGAGACACTAACTTGGTGGGTTGGGTGAAAATGAAGGTAAGAGAAGGGAAACAGATGGA AGTGATAGACCCAGAATTTCTCTCCGTAACTAAAGGAACTGATGAAGCTGAGGCAGAAGAAGTTAAAGAAATGGTTAGGTATTTGGAAATATCATTGCAG TGTGTTGATGATTTTCCTTCCAAGAGGCCTAGCATGTTGCAAGTGGTGGCCATGTTGAGAGAGCTGATGCCTGGATCAGCCAATGGAAGCAGCAACAGTG GTTGA
AA sequence Show only first row Show all	>Potri.008G140500.1 pacid=42808770 polypeptide=Potri.008G140500.1.p locus=Potri.008G140500 ID=Potri.008G140500.1.v4.1 annot-version=v4.1 MESNPVQLFHHLALALLLFVFSVSVSVTEQGPVPSIRTDAAALLSFKKIIQNDPNRVLSGWQINRSPCNWYGVSCTLGRVTHLDLSGSSLAGTISFDPLS SLDMLSALNLSSNPFTVNSTSLLHLPYALQQLQLSSTGLEGPVPEKFFSKNPNLVYVNLSHNNLSSLPDDLLLNSDKVQALDLSYNNFTGSISGSRVENS CNSLSQLDLSGNFLMDSIPPSLSNCTNLKTLNLSFNMITGEIPRSLGELGSLQRLDLSHNHISGWIPSELGNACNSLLELKLSYNNISGPIPVSFSPCSW LQTLDLSNNNISGPFPDSILQNLGSLERLLISYNLISGLFPASVSSCKSLKVLDLSSNRFSGTIPPDICPGAASLEELRLPDNLIEGEIPAQLSQCSKLK TLDLSINFLNGSIPAELGNLENLEQLIAWYNGLEGKIPPELGKCKNLKDLILNNNNLSGIIPVELFSCSNLEWISLTSNQFTGKIPREFGLLSRLAVLQL ANNSLSGEIPTELGNCSSLVWLDLNSNKLTGEIPPRLGRQLGAKALSGILSGNTLVFVRNVGNSCKGVGGLLEFAGIKAERLLQVPTLKTCDFTRLYSGA VLSLFTQYQTLEYLDLSYNELRGKIPDEIGEMMALQVLELAHNQLSGEIPASLGQLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSNNELTGEIPQR GQLSTLPATQYANNPGLCGVPLNPCGSGNSHAASNPAPDGGRGGRKSSATSWANSIVLGILISIASLCILVVWAVAMRVRHKEAEEVKMLNSLQASHAAT TWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYC KIGEERLLVYEFMEFGSLEEMLHGRGRARDRPILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMEARVSDFGMARLISALDTHLSVS TLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVREGKQMEVIDPEFLSVTKGTDEAEAEEVKEMVRYLEISLQ CVDDFPSKRPSMLQVVAMLRELMPGSANGSSNSG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	0	1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	1.00	0.9326
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.004G080200 [exp]	2.44	0.8495
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	6.92	0.8418
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.002G236200 [exp]	7.74	0.8447	Pt-XTR7.2
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G072766 [exp]	8.94	0.8095
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	11.66	0.8139
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	12.36	0.8095
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.001G239500 [exp]	12.64	0.7887
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.009G066800 [exp]	12.88	0.7668
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	14.00	0.7972	Pt-PNPK2.2

Compare expression of checked genes

Potri.008G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.