Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01980 1345 / 0 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 921 / 0 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2) AT1G79610 77 / 3e-14 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 66 / 9e-11 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100900 [exp] 1942 / 0 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.007G100500 [exp] 155 / 1e-42 AT2G01980 73 / 7e-15 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.016G000200 [exp] 64 / 6e-10 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013798 [exp] 972 / 0 AT2G01980 819 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Lus10039133 [exp] 936 / 0 AT2G01980 1319 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Lus10038725 [exp] 190 / 4e-55 AT2G01980 229 / 9e-70 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Lus10038727 [exp] 64 / 7e-10 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10039131 [exp] 51 / 5e-06 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10016583 [exp] 50 / 1e-05 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.008G140700.1 pacid=42807739 polypeptide=Potri.008G140700.1.p locus=Potri.008G140700 ID=Potri.008G140700.1.v4.1 annot-version=v4.1 ATGGGGAGTGCGATAGAAAAAGGAGTAGGTTTACCGTACAGAATATGGGAGTCCTCTTCTTCTTCATCTGCTGCTTCAGATGAATGGAATCCAACGGACA CTGTGCTTTTCTTTGGGTTAAGTCTGCTGCTTGGGATTGCGTGCAGGCATTTGTTGAGAGGCACCCGAGTCCCTTACACTGTTGCTCTTCTCGTCGTCGG CATTGCTCTTGGATCCTTAGAATATGGTACCAGTCATCAACTGGGAAGGATTGGGGATGGAATTCGGCTCTGGGCACATATTGATCCTGACCTTTTACTG GCTGTTTTCCTTCCTGCCCTTCTTTTCGAGAGTTCCTTTTCAATGGAAGTCCACCAAATTAAGAGGTGCATGGTGCAAATGCTTCTACTTGCTGTTCCTG GAGTTCTAATTTCGACATGTTGTCTTGGATGTGCTTTGAAGCTCATTTTCCCATATAACTGGAGTTGGACAACCTCTTTGTTGCTCGGGGGACTTCTGAG TGCTACTGATCCTGTGGCTGTTGTTGCTCTGTTGAAAGAGCTTGGTGCAAGCAAAAAATTGAGTACAATAATCGAAGGAGAATCCCTGATGAACGATGGG ACAGCAATTGTGGTCTATCAGCTATTCTATCGGATGGTCCTTGGGGAGAGCTTTACCTCGGGTGCCATAATCAAATTTCTAACTCAAGTTTCGCTTGGAG CTGTAGGCATTGGTATTGCTTTTGGAATTGCATCTGTTTTGTGGCTCGGGTTCATCTTCAATGACACAGTGATAGAGATTGCGCTGACACTAGCTGTGAG CTACGTTACTTACTTCACTGCTCAAGAGGGTGCTGCTGTTTCTGGCGTTTTGGCAGTGATGACTTTAGGAATGTTTTATGCTGCAGTAGCCAGGACTGCT TTCAAGGGTGATGGCCAACAGAGCTTGCATCATTTTTGGGAAATGGTTGCTTATATTGCAAATACATTAATTTTCATCTTAAGTGGTGTTGTTATAGCAG AAGGTGTTCTGAGCAGTGGCAATACTTTTCATAGCCATGGGCATACATGGGGCTACCTATTTCTTCTATACATTTTTGTGCAACTATCCCGGTTCATAGT TGTTGGAGCATTGTATCCATTTTTACGATATTTTGGTTATGGTTTGGATTGGAAGGAAGCTACCATTGTCATATGGTCAGGTCTTCGAGGGGCTGTTGCA TTATCACTTTCATTATCTGTTAAGCGCACTAGTGACAGCTCAATTTATCTCAGTTCTGATACAGGAACCTTGTTTGTTTTCTTCACTGGCGGAATCGTAT TTCTGACGCTTATTGTGAATGGGTCAACTACGCAGTTTATTTTACATCTTCTAGATATGGATAAGTTATCAGCTACCAAGAAGCGTATATTGAACTTCAC AAAGTATGAAATGTTGAACAAAGCACTAGAGGCTTTTGGTGATCTTGGGGAGGACGAGGAACTTGGACCTGTTGACTGGCCTACAGTTAAAAGATACATT ACAAGCTTAAATAATTTGGAAGGGTCATGCGAACACCCTCATGGTGCATCTGAAGCTGATAATAATTTAGACCCAACTAATCTGAAAGATATTCGCATAC GCCTTCTAAATGGAGTTCAGGCTGCTTATTGGGGGATGCTTGATGAGGGAAGGATAACACAAACAACTGCAAACATTTTGATGCAATCAGTAGATGAAGC AATCGACTTGGCTTCCCATGAACCTCTATGTGATTGGAAGGGCTTGCAATCCAATGTTCATTTTCCAAATTATTACAAGTTCCTTCAAGCAAGCATTTTC CCTCAAAAAATGGTTACTTATTTCACTGTAGAGAGGCTTGAATCTGCATGCTACATTTGTGCTGCATTTCTACGTGCCCATAGAATTGCACGGAGACAAC TACATGACTTTATTGGTGACAGTGGTATTGCTTCTATAGTCATTAATGAAAGTGATGCAGAAGGAGAAGAAGCAAGAAAGTTCTTGGAAGATGTTCGTGT TACATTTCCTCAGGTTTTGCGTGTTGTGAAAACAAGACAAGCAACATATTCAGTGCTGAACCATTTAATTGATTATGTCCAAAATCTTGAGAAGGTTGGG TTATTGGAAGAAAAGGAAATGCTTCATCTTCATGATGCTGTCCAGACTGACTTGAAAAGATTTCTAAGGAATCCTCCTTTAGTAATGCTTCACAAAATAA CTGACTTGATTAGTGCCCATCCTCTGCTGGGGGCCCTTCCTTCTATGGTGCGTGAACCCCTTGAACGTTCTTCCAAAGAAATAATGAAACCACGTGGTGT GCCCCTTTACAAAGAAGGCTCCAAACCAAATGGTGTCTGGCTAATTTCCAGTGGTGTTGTCAAGTGGACAAGCAAGAGCGTTAGGAGCAAACACTCATTG CATCCAACTTTTACACATGGGAGCACACTAGGGCTGTACGAACTGCTAGTTGGGAAACGTTGCATATGTGACATAATAACAGATTCTGTGGTACTCTGCT TTTTTATTGAAAGCGAGAAAATACTTTCTCTGCTAGGGTCAGACCCTGCAGTTGAAGATTTCCTGTGGCAGGAAAGTGCAATCGTTATTGCCAAACTCTT GCTTCCTCAAGTATTTGAAAAAATGCCAATGCAAGAATTGAGAGCCCTTGTAGCAGAAAGGTCAGTGATGACCACATACATCAGGGGAGAAACTATAGAA ATACCTCATCATTCTATTGGCTTTCTATTAGAAGGATTCATAAAAGCCCATGGTTTCCAAGATGAATTGACTGCGTCGCCTGCAGTACTTTTGCCTCCAC AAGGAAATCAAAGCTTTCAAAAGATAGGGATATCAGGTGCCCAAGCAGCCAGTTTCTCTCATCAAGGATCCCGGTATCAAGTTGAGGCAAGAGCGAGGGT AATCATTTTTGATATTGCAGCATTTGAAGCGGATGGTGCTTTGAGGAGAAGATCATCGTCATTGGTATCGGTTGATCACCCCCACAGATCTTTCACTAGA GAGCATGGTGGTCTTATGAGCTGGCCTGAAAATTTGTACAAACCAAGGGAACGTGAACAGAACTGTGTAGGGACTTGTCGATCAGAAAATAGCTTGTCTG TGAGAGCAATGCAGCTAAGCATATTTGGCAGCATGGTTGACATGCGGAGGCATGCCCACAGCTTTTCCGGTAGCCAAGTCAAGCGATCACACAGCTTGTC AGTTTTAAGAACCGCATCGTACCAGCAAGTTCGTGTCCCATCAGAAGAAGCTACTTATGCTAGGAAGAGTCTTGAAGTGAGGAAGTTGATTGGAAAAACT CATGCTCCCCCACTGCAGAGTACAGGCACAAATGAGACTTGTATCATTGATAATTACAGTGATGAATCTGATGCTGAAGATGAATTGGTGGTAAGAATTG ATTCGCCTAGTAGGCTGTCGTTCCATCATGCTTCTTAG
AA sequence Show only first row Show all	>Potri.008G140700.1 pacid=42807739 polypeptide=Potri.008G140700.1.p locus=Potri.008G140700 ID=Potri.008G140700.1.v4.1 annot-version=v4.1 MGSAIEKGVGLPYRIWESSSSSSAASDEWNPTDTVLFFGLSLLLGIACRHLLRGTRVPYTVALLVVGIALGSLEYGTSHQLGRIGDGIRLWAHIDPDLLL AVFLPALLFESSFSMEVHQIKRCMVQMLLLAVPGVLISTCCLGCALKLIFPYNWSWTTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDG TAIVVYQLFYRMVLGESFTSGAIIKFLTQVSLGAVGIGIAFGIASVLWLGFIFNDTVIEIALTLAVSYVTYFTAQEGAAVSGVLAVMTLGMFYAAVARTA FKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLSSGNTFHSHGHTWGYLFLLYIFVQLSRFIVVGALYPFLRYFGYGLDWKEATIVIWSGLRGAVA LSLSLSVKRTSDSSIYLSSDTGTLFVFFTGGIVFLTLIVNGSTTQFILHLLDMDKLSATKKRILNFTKYEMLNKALEAFGDLGEDEELGPVDWPTVKRYI TSLNNLEGSCEHPHGASEADNNLDPTNLKDIRIRLLNGVQAAYWGMLDEGRITQTTANILMQSVDEAIDLASHEPLCDWKGLQSNVHFPNYYKFLQASIF PQKMVTYFTVERLESACYICAAFLRAHRIARRQLHDFIGDSGIASIVINESDAEGEEARKFLEDVRVTFPQVLRVVKTRQATYSVLNHLIDYVQNLEKVG LLEEKEMLHLHDAVQTDLKRFLRNPPLVMLHKITDLISAHPLLGALPSMVREPLERSSKEIMKPRGVPLYKEGSKPNGVWLISSGVVKWTSKSVRSKHSL HPTFTHGSTLGLYELLVGKRCICDIITDSVVLCFFIESEKILSLLGSDPAVEDFLWQESAIVIAKLLLPQVFEKMPMQELRALVAERSVMTTYIRGETIE IPHHSIGFLLEGFIKAHGFQDELTASPAVLLPPQGNQSFQKIGISGAQAASFSHQGSRYQVEARARVIIFDIAAFEADGALRRRSSSLVSVDHPHRSFTR EHGGLMSWPENLYKPREREQNCVGTCRSENSLSVRAMQLSIFGSMVDMRRHAHSFSGSQVKRSHSLSVLRTASYQQVRVPSEEATYARKSLEVRKLIGKT HAPPLQSTGTNETCIIDNYSDESDAEDELVVRIDSPSRLSFHHAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	3.16	0.8208
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	3.46	0.8356
AT3G53690			RING/U-box superfamily protein...		Potri.019G093600 [exp]	4.12	0.8378
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	4.89	0.8328	Pt-KICP.1
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	7.93	0.8128
					Potri.004G080501 [exp]	9.89	0.7999
					Potri.017G035401 [exp]	15.49	0.8073
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.010G049200 [exp]	17.49	0.7973
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	19.62	0.8101
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	21.90	0.8319

Compare expression of checked genes

Potri.008G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.