Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01990 147 / 6e-43 unknown protein AT1G14630 147 / 7e-43 unknown protein AT5G48720 52 / 2e-07 XRI1, XRI x-ray induced transcript 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100700 [exp] 381 / 8e-134 AT1G14630 166 / 1e-50 unknown protein Potri.014G190000 [exp] 59 / 8e-10 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.002G244000 [exp] 57 / 3e-09 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039139 [exp] 106 / 3e-26 AT1G14630 120 / 3e-32 unknown protein Lus10013793 [exp] 103 / 5e-25 AT2G01990 118 / 1e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G140900.5 pacid=42807777 polypeptide=Potri.008G140900.5.p locus=Potri.008G140900 ID=Potri.008G140900.5.v4.1 annot-version=v4.1 ATGCTGCTTCTAAATTCATACTACCATAATTCTTACTCTTTTTCTACAAACACGACGTCAATAAATAGCACCCATTTGCATCATTCTAGTGTAAATGGCT CGCCAGGACACCAGGTCACCACTGCCCCATGTGAAATGATCGTGTGTCAAAATAACTATACAGAGACAAAAATACGGGCTGGTTTTGAGCTTCACTCCAT GGCTTATTACAAAAGCATTGGTGGTGCTGGCCTCTCTTCCCTAGGTTGGGATCTCCAAAGCCTCGGAGTTCTCAGAGCGGACATGTCTTTAGAGTCTGAT TTTTCAACCGGGTACTTAGAAGATGCTCTGCTTGAATTTAACGAGCCATCCAAACGAAGACGCTTGCTGTTGTTCGCTACTGATCATGATGATCAATCCG AAAAATCAAATCACCTTCCAGAGAGCAACTGGAATGAAGAAAACTTTGACGACTGGGAATTAATGTCAGAGAATTTTAGTTGCATGAGCCACATTACTGG TTTTCGTGGACCTTCCGATGAGCTCGTGAGCACGTCAGTGAGCAATACTAGTGACGAAGCAAATGTTATCTCTGAGATAACAACACCAGGAGAGAAAATA TCAGCCCCGGAAACTCTTGATTATTCATCATCATCTTCTTACAAAGACTTGGCTGCCACAAACTCCATTTTTGAAAAAGAAAACTCCCCTCATTCTACTG ATGATCATGAGAATAAGAGAAGGAAGACGGTGGCAACAAGGGTGGTGTATCCATTTGCACTAGTGAAACCAGGTGGGGTAGAAGGAGACATGACCATAAA CGATATCAATGAGAGGATCTTGATGCCACCGACAAGGCCGGTAAGACATCCGGTAGGGGATTTTGCGTGTAGGCCATGTGTATCTGCTGATGGCCCAGGT CTTTCTGGCAAAGCTGTAGTAGCCCTTACAAGAATCCACACGCAAGGGAGAGGCACCATCACTATTATTAGAACGAAAGGTTAA
AA sequence Show only first row Show all	>Potri.008G140900.5 pacid=42807777 polypeptide=Potri.008G140900.5.p locus=Potri.008G140900 ID=Potri.008G140900.5.v4.1 annot-version=v4.1 MLLLNSYYHNSYSFSTNTTSINSTHLHHSSVNGSPGHQVTTAPCEMIVCQNNYTETKIRAGFELHSMAYYKSIGGAGLSSLGWDLQSLGVLRADMSLESD FSTGYLEDALLEFNEPSKRRRLLLFATDHDDQSEKSNHLPESNWNEENFDDWELMSENFSCMSHITGFRGPSDELVSTSVSNTSDEANVISEITTPGEKI SAPETLDYSSSSSYKDLAATNSIFEKENSPHSTDDHENKRRKTVATRVVYPFALVKPGGVEGDMTINDINERILMPPTRPVRHPVGDFACRPCVSADGPG LSGKAVVALTRIHTQGRGTITIIRTKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01990			unknown protein		Potri.008G140900 [exp]	0	1
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	2.44	0.8050
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	3.16	0.7821
AT4G33160			F-box family protein (.1)		Potri.006G217500 [exp]	10.48	0.6417
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.013G155900 [exp]	14.07	0.6806
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	16.61	0.7473	CYCA3.1
AT3G56870			unknown protein		Potri.014G181200 [exp]	20.34	0.7295
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	20.71	0.7127
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Potri.006G275700 [exp]	21.09	0.7426
AT5G02440			unknown protein		Potri.001G238900 [exp]	22.62	0.7258
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	23.66	0.7269

Compare expression of checked genes

Potri.008G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.