Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TRIP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46290 553 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 542 / 0 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT1G15470 147 / 1e-41 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15610 135 / 5e-37 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 134 / 1e-36 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 78 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 77 / 2e-15 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G64730 73 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 73 / 2e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 69 / 5e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100101 [exp] 649 / 0 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G174600 [exp] 149 / 6e-42 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G059500 [exp] 147 / 2e-41 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G306500 [exp] 83 / 5e-18 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 79 / 6e-16 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 76 / 3e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 76 / 3e-15 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 73 / 1e-14 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 74 / 2e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010332 [exp] 608 / 0 AT2G46290 550 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021857 [exp] 608 / 0 AT2G46290 549 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019450 [exp] 132 / 1e-35 AT3G15610 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043302 [exp] 115 / 1e-29 AT3G15610 502 / 2e-180 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 82 / 6e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 80 / 3e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 77 / 8e-16 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 76 / 2e-15 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 74 / 6e-15 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 75 / 1e-14 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G141400.1 pacid=42808490 polypeptide=Potri.008G141400.1.p locus=Potri.008G141400 ID=Potri.008G141400.1.v4.1 annot-version=v4.1 ATGAGACCAATTTTGATGAAAGGGCATGAAAGGCCCTTAACATTCTTAAAGTACAACAGAGAAGGGGATCTCTTGTTTTCCTGCGCTAAAGATCATAATC CCACCGTCTGGTTCGCCGATAACGGCGAACGTTTGGGAACTTACCGTGGTCACAACGGCGCCGTTTGGTGTTGCGATGTCTCAAGAGATTCGATGCAGCT GATTACTGCTAGTGCGGATCAGTCGGTGAAGCTTTGGAATGTACAAACTGGAGCGCAATTGTACACATTTAGTTTCAATTCGCCGGCTCGGTCTGTGGAC TTTTCTGTAGGTGACAAGCTTGCTGTTATTACCACTGATCCTTTCATGGGAGTCACTTCTGCCATTAATGTCAAACGCATTTCTGACGATCCTTCCCAGC AGAGTGGTGAATCCGTGCTCACCATCACTGGACCTGCGGGAAGAATTAATAGAGCTGTTTGGGGACCCCTGAACAGGACTATCATAAGTGCTGGAGAGGA TTGTGTGGTCCGCATTTGGGATTCTGAGACTGGAAAATTGTTGAAAGAGTCGGAACCGGAAGTTGGGCATAAGAAGCCGATATCATCACTCACAAAATCT GCTGATGGTTCTCACTTCCTGACTGGTTCTCTAGATAAATCTGCGAAGCTTTGGGACTCCAGAACTTTAACTCTTATCAAGAACTACACAACAGAACGCC CAGTTAATGCTGTTACAATGTCTCCGCTACTTGATCATGTTGTGCTTGGAGGTGGTCAGGATGCATCATCTGTAACCACAACTGATCACCGTGCTGGGAA GTTTGAAGCCAAATTCTACGACAAGATTCTTCAAGAAGAAATTGGTGGTGTGAAAGGTCATTTCGGACCTATAAATGCTTTGGCGTTTAACCCTGATGGG AAAAGTTTCTCAAGTGGAGGCGAGGACGGTTATGTGAGGCTGCATCACTTCGATCCTGATTATTTCAACATAAAGATTTAG
AA sequence Show only first row Show all	>Potri.008G141400.1 pacid=42808490 polypeptide=Potri.008G141400.1.p locus=Potri.008G141400 ID=Potri.008G141400.1.v4.1 annot-version=v4.1 MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMQLITASADQSVKLWNVQTGAQLYTFSFNSPARSVD FSVGDKLAVITTDPFMGVTSAINVKRISDDPSQQSGESVLTITGPAGRINRAVWGPLNRTIISAGEDCVVRIWDSETGKLLKESEPEVGHKKPISSLTKS ADGSHFLTGSLDKSAKLWDSRTLTLIKNYTTERPVNAVTMSPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG KSFSSGGEDGYVRLHHFDPDYFNIKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46290			Transducin/WD40 repeat-like su...		Potri.008G141400 [exp]	0	1	Pt-TRIP.2
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.019G131900 [exp]	1.41	0.9649	Pt-RPL10.4
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	2.44	0.9655
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.004G149200 [exp]	3.74	0.9473	TOM6.1
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	6.63	0.9588	RPL2.2
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G101000 [exp]	7.07	0.9579	Pt-RPL7.7
AT3G56340			Ribosomal protein S26e family ...		Potri.013G093700 [exp]	7.54	0.9423	RPS26.1
AT5G35530			Ribosomal protein S3 family pr...		Potri.006G222100 [exp]	7.74	0.9595
AT1G57720			Translation elongation factor ...		Potri.019G077000 [exp]	7.93	0.9419
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Potri.016G063200 [exp]	8.94	0.9522	Pt-RPS5.1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	9.38	0.9558

Compare expression of checked genes

Potri.008G141400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.