Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42960 299 / 2e-101 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1) AT3G51680 211 / 2e-66 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 190 / 2e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 188 / 1e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 187 / 6e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 176 / 1e-53 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47140 171 / 9e-52 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 167 / 3e-50 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 166 / 1e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 163 / 1e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100000 [exp] 440 / 6e-157 AT3G42960 250 / 4e-83 TAPETUM1, TAPETUM 1 (.1) Potri.006G105900 [exp] 222 / 6e-71 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 218 / 4e-69 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 209 / 1e-65 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 201 / 6e-63 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 199 / 3e-62 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 198 / 7e-62 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 198 / 7e-62 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 195 / 7e-61 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019945 [exp] 227 / 4e-74 AT3G42960 196 / 8e-63 TAPETUM1, TAPETUM 1 (.1) Lus10022756 [exp] 207 / 7e-65 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 207 / 1e-64 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 201 / 5e-63 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 201 / 5e-63 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 200 / 1e-62 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 198 / 6e-62 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 198 / 6e-62 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 198 / 2e-61 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 196 / 3e-60 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.008G141800.2 pacid=42806505 polypeptide=Potri.008G141800.2.p locus=Potri.008G141800 ID=Potri.008G141800.2.v4.1 annot-version=v4.1 ATGTATAATAAAGAAGACGAAGTTCTGCTAGCTTACAGTTTCGAAGTGGTTGCAATCAAGGAACGAGAAGAGCATGTAAGACATGCAGTTTCCAGAAGGC ATTTTCGGTATGCCATGGAGCCACATATTGTTCGGAGGCATGGTGATGATGTCCAGAGGACAGCTTCAAAGAGGTTGATGGGCAAAGTTGCAGTCATAAC TGGTGGTGCTAGAGGCATTGGGGCAGCCACAGCAAAAGTATTTGCAGAAAATGGAGCGAGTGTTATCATTGCTGACATACTCGACGACCTAGGGACCTCC CTAGCTGATTCCATTGGAGGCCGATACATACACTGTGATGTTGTTAATGAAGCTGACGTAGAATCAGCTATAAATCTTGCACTGGCATGGAAGGGGAAAC TAGACATCATGTTCAACAATGCAGGGATTTCTGGCACTGAAGGGAGCATCACCAACTTAGACATGGAGCAAGTGAACTACTTGCTCTCAGTTAACGTCAA CGGAATTCTACATGGAATCAAGCACGCTGCAAGAGTCATGATCAAAGGCCAAAAGGGAGGGTGCATCATATGCATGTCAAGCTCTGCAGCCATCATGGGA GGCCTTGGATCACATCCATACTCACTGTCCAAAGAAGCTATTATCGGATTGATGAGAAGCACTGCGTGTGAGCTAGGGGTACATGGAATTCGTGTCAATT GCATTTCCCCTCATGGTGTCGCCTCAGAGATGCTTGTTGGTGCCTACAGAAAGGTCCTTGGGAAAAAGGATATGACACCTGAAGAAGTGAGCAAGATTGT TGGAGAGAGAGGGAGTCTTTTGAAAGGAAGAAGTCCAAGCCTGGAAGATGTGGCACAAGCTGTAATGTTTCTTGCCAGTGAAGAAGCTGGGTATATAACA GCACACAATCTCGTTATTGATGGGGGTTTTACCTCTGCCAGTAGTAACATGAGTTTCATCTACCAGTAG
AA sequence Show only first row Show all	>Potri.008G141800.2 pacid=42806505 polypeptide=Potri.008G141800.2.p locus=Potri.008G141800 ID=Potri.008G141800.2.v4.1 annot-version=v4.1 MYNKEDEVLLAYSFEVVAIKEREEHVRHAVSRRHFRYAMEPHIVRRHGDDVQRTASKRLMGKVAVITGGARGIGAATAKVFAENGASVIIADILDDLGTS LADSIGGRYIHCDVVNEADVESAINLALAWKGKLDIMFNNAGISGTEGSITNLDMEQVNYLLSVNVNGILHGIKHAARVMIKGQKGGCIICMSSSAAIMG GLGSHPYSLSKEAIIGLMRSTACELGVHGIRVNCISPHGVASEMLVGAYRKVLGKKDMTPEEVSKIVGERGSLLKGRSPSLEDVAQAVMFLASEEAGYIT AHNLVIDGGFTSASSNMSFIYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42960		ASD, ATA1	TAPETUM1, TAPETUM 1 (.1)		Potri.008G141800 [exp]	0	1	Pt-ATA1.1
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	7.07	0.6335
AT4G18530			Protein of unknown function (D...		Potri.003G003100 [exp]	21.49	0.6295
					Potri.011G144433 [exp]	23.81	0.6222
AT5G20810			SAUR-like auxin-responsive pro...		Potri.006G137200 [exp]	30.38	0.5698	SAUR46
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.002G070401 [exp]	31.04	0.5930
AT2G27330			RNA-binding (RRM/RBD/RNP motif...		Potri.009G160300 [exp]	49.39	0.5769
AT1G63220			Calcium-dependent lipid-bindin...		Potri.002G155600 [exp]	50.51	0.5757
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.011G087900 [exp]	55.89	0.5279	Pt-WRK.1
AT4G38040			Exostosin family protein (.1)		Potri.012G091600 [exp]	77.76	0.5162
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	113.48	0.4992

Compare expression of checked genes

Potri.008G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.