Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 455 / 1e-160 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 426 / 1e-148 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 359 / 6e-123 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 363 / 4e-120 unknown protein AT4G15970 321 / 3e-108 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 218 / 5e-68 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28700 213 / 4e-66 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 205 / 2e-63 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 180 / 1e-53 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 51 / 5e-07 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099400 [exp] 609 / 0 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 399 / 8e-139 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 390 / 1e-135 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 233 / 4e-74 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 233 / 1e-73 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 230 / 6e-73 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 231 / 2e-72 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 54 / 5e-08 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G092400 [exp] 46 / 2e-05 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034422 [exp] 449 / 3e-158 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 439 / 9e-155 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 425 / 2e-150 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 378 / 4e-130 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 375 / 1e-128 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 305 / 1e-101 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 283 / 5e-93 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 282 / 1e-92 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 275 / 2e-89 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 206 / 1e-63 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.008G142200.5 pacid=42807110 polypeptide=Potri.008G142200.5.p locus=Potri.008G142200 ID=Potri.008G142200.5.v4.1 annot-version=v4.1 ATGTTGTCTGAATCCCCCGTGCCCCGTGCCGTACTCGTCTTCGCTTCCATTGCCGTCTTCATTTTGCTCCTCTACGGCGCTTCTGATTCTCCCCCCTTCC TCTCCTCCTCCTCCTCCTCCTCCGGTTACTCCTTTAACATCTTCCCTTCTCTCCTCGGCGGCAGCGATTCTCAAATCCCAATTAATGGTGGTGATGATTA TAATAAGCTGGAGAAAGTTCTGAAAGAAGCTGCAATGGAAGATAAGACAGTAATAATTGCTACATTAAATGAAGCATGGGCAGCTCCAAATACAGTTATT GATTTATTCCTTGAAAGCTTCAGAATTGGTCAGGGAACGCGCAGGCTCTTGGATCATCTGGTGATTGTTGCGTTGGATGAAAAGGCGTATAGGCGGTGTA TGGAATTACATACGCATTGCTTTGCTCTTGTTACTCAAGGACTTGACTTTCATGACGAGGCTTATTTTATGACCCATGTCTATTTGGAGATGATGTGGAG ACGCATTGATTTCTTGCGCTCTCTTCTTGAAATGGGGTATAACTTTGTTTTCACGGATGCTGATATCATGTGGTTCAGGGACCCCTTTCCACGGTTTTTT CTGGATGCTGATTTCCAGATTGCATGCGATCATTTCTCAGGCAACTCCAGTGACATACAAAACAGACCCAATGGAGGCTTTAACTATGTAAAGTCCAACA AACGCTCAATAGAATTTTACAAGTTCTGGTATTCTTCACGGGAGACCTATCCTGGCTTCCATGATCAGGATGTCCTTAATTTTATCAAATTTGATCCTTT CATTGAGAGCCTTGGATTGAAGATGAGATTCTTGGACACTGCTTTCTTTGGGGGACTTTGTGAACCCAGCAAGGATTTGAATTTAGTTTGTACAATGCAT GCAAATTGTTGTTTTGGTTTGGATAGCAAGCTCCATGATCTTGGAATTATGCTTCAGGATTGGAAAACTTTTTTATCTTTGCCACCAACCTTGAAACGAT CACTGTCTGTGTCTTGGAGGGTACCACAGAACTGCAGTCTTAATTCTCTACATCAACATGATTCTCCGGAAAAGAGTGTTCAACAAACTGTGGGACATTG A
AA sequence Show only first row Show all	>Potri.008G142200.5 pacid=42807110 polypeptide=Potri.008G142200.5.p locus=Potri.008G142200 ID=Potri.008G142200.5.v4.1 annot-version=v4.1 MLSESPVPRAVLVFASIAVFILLLYGASDSPPFLSSSSSSSGYSFNIFPSLLGGSDSQIPINGGDDYNKLEKVLKEAAMEDKTVIIATLNEAWAAPNTVI DLFLESFRIGQGTRRLLDHLVIVALDEKAYRRCMELHTHCFALVTQGLDFHDEAYFMTHVYLEMMWRRIDFLRSLLEMGYNFVFTDADIMWFRDPFPRFF LDADFQIACDHFSGNSSDIQNRPNGGFNYVKSNKRSIEFYKFWYSSRETYPGFHDQDVLNFIKFDPFIESLGLKMRFLDTAFFGGLCEPSKDLNLVCTMH ANCCFGLDSKLHDLGIMLQDWKTFLSLPPTLKRSLSVSWRVPQNCSLNSLHQHDSPEKSVQQTVGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.008G142200 [exp]	0	1
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Potri.017G050900 [exp]	1.41	0.9180
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	3.60	0.9246
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	10.67	0.8992
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	17.02	0.8789
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	19.39	0.8978
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	19.77	0.8700
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.009G049400 [exp]	20.14	0.8861	CHLD.1
AT1G48950			C3HC zinc finger-like (.1)		Potri.012G058550 [exp]	22.31	0.8102
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	23.23	0.8951
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.006G038900 [exp]	23.23	0.8575

Compare expression of checked genes

Potri.008G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.