Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02070 409 / 1e-135 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1) AT2G02080 340 / 5e-110 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 333 / 5e-108 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT5G66730 317 / 3e-101 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 315 / 2e-100 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT3G50700 311 / 1e-99 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 309 / 8e-99 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT5G03150 309 / 4e-98 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G44160 306 / 2e-97 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G13810 306 / 4e-97 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099200 [exp] 941 / 0 AT2G02070 384 / 4e-126 indeterminate(ID)-domain 5 (.1) Potri.010G099100 [exp] 518 / 4e-179 AT2G02070 369 / 4e-121 indeterminate(ID)-domain 5 (.1) Potri.008G142500 [exp] 469 / 9e-160 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.006G129300 [exp] 330 / 7e-106 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 326 / 1e-104 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 319 / 2e-102 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.003G036900 [exp] 318 / 3e-101 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.007G028800 [exp] 318 / 3e-101 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G215100 [exp] 316 / 3e-101 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035092 [exp] 374 / 2e-122 AT2G02070 334 / 3e-107 indeterminate(ID)-domain 5 (.1) Lus10010820 [exp] 309 / 5e-101 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 315 / 5e-100 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 315 / 8e-100 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10019927 [exp] 311 / 5e-99 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 312 / 6e-99 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 310 / 9e-99 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 308 / 3e-97 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 311 / 2e-94 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 295 / 6e-93 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G142400.6 pacid=42807352 polypeptide=Potri.008G142400.6.p locus=Potri.008G142400 ID=Potri.008G142400.6.v4.1 annot-version=v4.1 ATGGCTGCTTCTTCATCCGTGCCTTTCTTTGGAATTAGGGAAGAGGATCAAAACCAGATGAAACAACAGCATTCCTCAACCCCAACTTCATCTTCAGCCC AGGCTCCGCCGCCACCAAAGAAAAAGAGAAACCAACCTGGAACACCAAGCAAGTATCATCAATTTTATCTAAAGATCGATCTACCTATTACAAATCCAGA CGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAG CTCCACAGAAGAGGACACAACCTACCTTGGAAGCTAAAGCAGAAGACTACAAAAGAAGTGAGGAGGAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCC ACCATGACCCTTCTAGAGCTCTTGGTGACCTTACTGGAATAAAAAAACACTACTCCAGGAAACACGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAA AAGATACGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGTACTCTCTTCTCAAGACGTGACAGC TTTATCACTCACAGGGCATTCTGTGACGCATTGGCTCAAGAAAGTGCAAGAAACCCTCCTCCCAACTTGAACACAATTGGGAGTCATTTGTATGGAAGTA GCAACATGACCTTAGGCTTATCTCGAGTAGGTACTCAAATTTCTTCATTACAAGACCACAGTAACCAGTCTACTGACGTCTTACGATTTGGTGGTGGTGT CCGGACTGGACAATTTGATCATCTTCTCCCTCCATCAATTGGATCATCTTCATTTCGACCTCCACAGCAAATGCCTTCATCTGCCTTCTTCATGCAAGAA ACAAGCCAGAATTATCATGATGAAAACCAATCTCAGCAAGAGTTGTTGCAAAATAAGCCATTTCATCATGGACTGATGCAATTTGCTGATATTCACAACA ACACAAGCAACCCTCCCTCTGCTGGCAATCTATTCAACCTTAGCTTTCTTTCCAATAGTAGCACCACAAACAGTAACAACGCAAACAATTCCAACAGCAA CTTACCAACTTCAGGATTGCTAATATCCGATCATTTCAATAACCAAAATGGTGTTGGTGGTGGGAGTGAAGGGACTAATAACTTCTCAAACAATGTAAGG GGTAATCAAATGACCTCTGGTGTTCCTTCTCTCTTTAGTTCTTCGGTTCAGAATGATAACATGGTCTCTCACATGTCTGCTACTGCGCTGCTTCAAAAGG CTGCTCAAATGGGTTCCACTTCAAGCAACAATAGTGCCTCATTGCTAAGAAGTTTTGGTAGCTCTTCTTCAAGTGGAACCAAATCAGATAGGGCGCTAGT TGGTGGGAACTTTGGTGGCATGCTCAGCGACAACGAGAATAATCTTCATGAACTAATGAACTCATTTGCTCCTGGGAATCCCTCCATTTTTGGTTCTGGA CATGCACAAGAAAACCCCTACGGTGGATATACTGCAAATAGGACTAGTCTGGAGCAAGAAAAGCAACACCATGGCCCAAATTTTGGCAATATTAATATGG ATGAAGCAAAGTTGCACCAAGGTCTCAATGCAAGCAATATCGGTGGATCTGATAGACTGACAAGAGACTTTCTTGGTGTTGGTCCTCAAATAGTGAGAAG CATGAGTGGATCATCAGGGTTTTCACAAAGAGAAAAACAGCAGCAGCAGCAGCTACAACATCAGCATCATGGCATGGATATGGGTGACTCCTCCTTGGAT TTAGAGAGGCACAATACTAATATTTCTGCGGCGCCGACAAGCCAATCTTTCGGAGGAAATGGGAGTTTTCAGTGA
AA sequence Show only first row Show all	>Potri.008G142400.6 pacid=42807352 polypeptide=Potri.008G142400.6.p locus=Potri.008G142400 ID=Potri.008G142400.6.v4.1 annot-version=v4.1 MAASSSVPFFGIREEDQNQMKQQHSSTPTSSSAQAPPPPKKKRNQPGTPSKYHQFYLKIDLPITNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQ LHRRGHNLPWKLKQKTTKEVRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDS FITHRAFCDALAQESARNPPPNLNTIGSHLYGSSNMTLGLSRVGTQISSLQDHSNQSTDVLRFGGGVRTGQFDHLLPPSIGSSSFRPPQQMPSSAFFMQE TSQNYHDENQSQQELLQNKPFHHGLMQFADIHNNTSNPPSAGNLFNLSFLSNSSTTNSNNANNSNSNLPTSGLLISDHFNNQNGVGGGSEGTNNFSNNVR GNQMTSGVPSLFSSSVQNDNMVSHMSATALLQKAAQMGSTSSNNSASLLRSFGSSSSSGTKSDRALVGGNFGGMLSDNENNLHELMNSFAPGNPSIFGSG HAQENPYGGYTANRTSLEQEKQHHGPNFGNINMDEAKLHQGLNASNIGGSDRLTRDFLGVGPQIVRSMSGSSGFSQREKQQQQQLQHQHHGMDMGDSSLD LERHNTNISAAPTSQSFGGNGSFQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	0	1
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	1.00	0.8950
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	6.48	0.8767
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063200 [exp]	7.07	0.8594
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	7.07	0.8943
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	8.48	0.8796
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	8.83	0.8693	Pt-BRI1.2
AT5G57340			unknown protein		Potri.006G165500 [exp]	17.17	0.8461
AT2G27830			unknown protein		Potri.009G149200 [exp]	20.97	0.8473
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	21.90	0.8699
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Potri.008G204700 [exp]	23.23	0.8825

Compare expression of checked genes

Potri.008G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.