Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14570 542 / 0 UBX domain-containing protein (.1.2.3.4) AT4G14250 259 / 4e-78 structural constituent of ribosome (.1.2) AT1G59550 150 / 1e-41 UBX domain-containing protein (.1) AT3G23605 107 / 2e-27 Ubiquitin-like superfamily protein (.1) AT4G11740 45 / 6e-05 SAY1 Ubiquitin-like superfamily protein (.1) AT4G00752 44 / 0.0003 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098800 [exp] 777 / 0 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.001G109500 [exp] 49 / 4e-06 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 43 / 0.0004 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013795 [exp] 594 / 0 AT1G14570 521 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10039137 [exp] 593 / 0 AT1G14570 519 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10029591 [exp] 47 / 3e-05 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 46 / 6e-05 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 44 / 0.0002 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 42 / 0.0008 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0172 [poplar] [flax] Thioredoxin PF13899 [poplar] [flax] Thioredoxin_7 Thioredoxin-like CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G142800.1 pacid=42806139 polypeptide=Potri.008G142800.1.p locus=Potri.008G142800 ID=Potri.008G142800.1.v4.1 annot-version=v4.1 ATGTCAATGGAGGGAATGTTATCTGCGAATGATGAGCAGAGTATGGTGTCTTCCTTCCTCGAGATCGCAGTTGGCCAAACTGCCGAGACTGCCCGTCAGT TCCTGCAGGCCACAAGCTGGAAGCTTGAAGATGCTATTCAGTTATTTTATGTAGGGAATGAAGGTGGGGTGGTTGCATCTGCGTCACACCCTCCTCAAAC TGAAACCCGGACAGATGTACATGAAAGTGGATTGAAGGACTTCGGAAATGAAAATGTTGGACCTGGTGGTGGAGAGGAAGTACGTGCTCCTTTACCTGTT GTGAGGGATACCCTCTATGATGATGCCATGTTATATGGAGCGTCAAGGATGGGACACCCACCACATGAAGCCAGTTCATTGATTGCATTTCGCAACTTTG ATGAGGAAATGAAACATTCTGGGGTCTGGGAATCAGACCAAGGTTCTACATCCACAATAGATAACCCTCGAGATAATCTTGCTTCTTTATATCGACCTCC TTTTCATTTGATGTTCCATGGATCATTTGAAAAGGCAAAGGATGCTGCTTCTGTTCAGGACAAATGGCTTCTAGTGAACTTGCAATCCACAAAGGAGTTC AGCTCTCATATGTTAAATCGGGATACATGGGCAAATGAAGCTGTTGCTCAGACAATAAGTACCAATTTTATCTTCTGGCAGGTATATGATGATACAAGTG AGGGAAGGAAAGTTTGTACATATTACAAATTGGATTCTATACCAGTAGTCCTAGTAATCGACCCAATCACAGGTCAAAAAATGCACTCATGGGTTGGAAT GGTACAGCCTGAGAGTTTGCTGGAGGATCTGGTACCATTCATGGATGGTGGCCCAAGGGATCATCACAAAACCCTGTCTCATAAACGTCTAAGGGGCAGT GCTCTGACTCCGCAAAAAAGCAAAGCTCCGGTGCCTGCTTATGAAACTAATGAAGAAGACGAGGAAGTGCAAAGGGCATTAGCTGCTTCAATGGAGAGCA TGAAAGAGTCCAGTGCAGTTGCTTCCAATGATAAAGATGAAGCCAGTACCACTCAGGAGGAAGAAAATTGTTCAAGTAGGATGCCAATGTATCCACCTCT ACCTGAAGAACCCAGTGGCGATAAGAGTCTCCTTTGTAGGGTTGGAATTCGTCTTCCTGATGGACACAGAGTCCAGAGAAATTTCTTGAAAACTGATCCA ATACAGCTGCTATGGTCATTTTGCTATTCTCAACTAGAAGAAGCTGGGACAAAGCTGTTTCGTTTGACGGAGGCAATTCCAGGATCAAAGAGGCTGGATT ACGATAGTAAAATGACCTTTGGGGAGTCGGGCTTGGCCAACTCTATGATTTCGGTTGCTTGGGATTGA
AA sequence Show only first row Show all	>Potri.008G142800.1 pacid=42806139 polypeptide=Potri.008G142800.1.p locus=Potri.008G142800 ID=Potri.008G142800.1.v4.1 annot-version=v4.1 MSMEGMLSANDEQSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGVVASASHPPQTETRTDVHESGLKDFGNENVGPGGGEEVRAPLPV VRDTLYDDAMLYGASRMGHPPHEASSLIAFRNFDEEMKHSGVWESDQGSTSTIDNPRDNLASLYRPPFHLMFHGSFEKAKDAASVQDKWLLVNLQSTKEF SSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGRKVCTYYKLDSIPVVLVIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRLRGS ALTPQKSKAPVPAYETNEEDEEVQRALAASMESMKESSAVASNDKDEASTTQEEENCSSRMPMYPPLPEEPSGDKSLLCRVGIRLPDGHRVQRNFLKTDP IQLLWSFCYSQLEEAGTKLFRLTEAIPGSKRLDYDSKMTFGESGLANSMISVAWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14570			UBX domain-containing protein ...		Potri.008G142800 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.018G121200 [exp]	1.00	0.7751
AT2G45500			AAA-type ATPase family protein...		Potri.014G071900 [exp]	17.14	0.6466
AT5G15120			Protein of unknown function (D...		Potri.013G064200 [exp]	17.83	0.7219
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	21.26	0.7429
AT3G18860			transducin family protein / WD...		Potri.004G150700 [exp]	23.45	0.7292
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	25.27	0.6368
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	26.11	0.7087
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	26.83	0.7143	Pt-BOU.2
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	29.25	0.7159
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.003G064300 [exp]	31.65	0.5995

Compare expression of checked genes

Potri.008G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.