Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13770 543 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G42310 146 / 7e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 140 / 7e-35 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 135 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G32630 131 / 5e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G06710 132 / 7e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 130 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 129 / 4e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G02860 127 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 127 / 2e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098700 [exp] 964 / 0 AT5G13770 584 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G257300 [exp] 143 / 6e-36 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 144 / 7e-36 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.016G025600 [exp] 141 / 3e-35 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 139 / 1e-34 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G014100 [exp] 138 / 6e-34 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 138 / 6e-34 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 137 / 1e-33 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 136 / 1e-33 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000268 [exp] 586 / 0 AT5G13770 528 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035089 [exp] 575 / 0 AT5G13770 525 / 1e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012328 [exp] 143 / 1e-35 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 143 / 2e-35 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 139 / 3e-34 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001284 [exp] 139 / 3e-34 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012068 [exp] 138 / 1e-33 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 136 / 3e-33 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009465 [exp] 135 / 5e-33 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027914 [exp] 135 / 7e-33 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G142900.1 pacid=42808442 polypeptide=Potri.008G142900.1.p locus=Potri.008G142900 ID=Potri.008G142900.1.v4.1 annot-version=v4.1 ATGGTCTCAACTCTTAACAGTCCAAAAACTCTGAAAAGTGAAACCTCATTTCCAATGGCCATTCCTAGTAGTTCTCCAGATTGGTCAGTACCTTCCATTA ACTCTTGCAGAAAGCCTCACAAGGTTATCTTCACTCAAACATGCAAAAACCTTCACTTTCTCCCTCTTCCATGCTTCAATATTCCTGTTTTTCACGTGAA TTCTTCTAGTTGTCCATCCCCTATCATAGAAGAAGAGTCATCCACGAATTCTCCTGTCATCCCATTAGACTTGAGACTTGAAGATACTCAACACTATCCA ATTCCAGACCATTCAGACAAGTTAAATGATTTTTTATGTGGCGTACTGCGAGATCCCAAGTCTGAAGAACTAGCATACGAGTACTACAAGAAAGCAAAAG AAAAGCAAGAATTTAGGCCTAAAAGACCAATGCTAAAGCTTCTAATAAGGTACTTGATACAATCAGAGAAGTGGGGTTTGGTTTTGCCAGTGGCTGATGA TTTTAAAAAGTATAGTGTGTTGCCAGATAGCTATACTTTTTCAACACTAGTTAGTAGTTGCATTAGAGCTAGAAAATTCAAAATTGTAGAGGGATTGCTT GAAATTTCTATATCTGATAGTAAAATTGCTGTTTTGGCTTTTGATTCAGCAATGAAAGGGTATAACAAGCTACATATGTATGGTAGCACACTTTCTGTAC ACGAAAAGATGAAATTAGCAGGCATTCCTTTGGATTCTGGGTGTTACTTCCAGACAATGAAGGCACGCCATAAATTAGGAGATGCGGAGAGAGTTGTCGA AATGTTTAATGAGTTTGAAAGTAGAAAAATAGATTCAAAACCAATGATCTTAAGTCAAATGTACAAGATATTATGCGAGTCATTGGGGAGATCAGGCCAA GTTTTTGAAGCTCTTGAATACTTCAGGGACATGAAAAAGAAAGGGATTCTGGAGGACTCTTCAATGTACTCTTCCTTGATCTGTTCATTGGTAAATATTC GAGAAGTAAAGTTAGCTGAGGAGCTGTATAAAGAAGCTCAAGAGAAGAGAATGTTAAAGGATCCAGAAACTTTTTTAAAGCTTGTGTTGATTTATATGGA AGAAGGACAGATGGAGAAGACAGTTGAAATTGTCAAGGAAATGAAGGGTACTGCTAAACTGAAGGTGTCTGATTGCATTTTCTGTGCAGTTGTCAATGGC TTTTCTAAAAGAAGAGGGTTCGATGCAGCTGTTAAGGTTTATGAGGAGTTGAAGTATGATGGCTGTGAACCAGGACAGGTGACATATGCTTCTGTGATAA ATGCCTATTGCCGAGTTGGGCTTTATTCTAAAGCTGAAGTTGTGTTTTTTGAGATGGAAGCAAAGGGGTTCGACAAATGTGTCGTGGCGTACTCCAGCAT AATCTCGATGTATGGGAAAACAGGTAGGCCAAGAGATGCTATGAGGCTTGTAGCAAAGATGAAACTAAAAGGTTGTCAGCCTAATACATGGATATACAAT TCTTTGGTGGACATGCATGGAAGAGCCAAGGATTTAAGGCGGGTGGAGAAGCTCTGGAAGGAGATGAAGAGAAGAAAAGTGGCTCCAGATAAAGTGACTT ACACTAGTATTATAAGTGCTTATAGCAAGTCCAAAGAGTATGAGATGTGTGTGAGGTTTTTCCACGAGTATAGAATTAATGGGGGTGTAATTGATGGGGC TATTGCAGGAATTATGGTTGGAGTTTTCTCTAAAATTAGTCGGATTGATGAGTTGCTGAAGCTTTTGAGGGACATGAAATCTGAAGGAGCACCGATCGAC GAGAGGCTTTATGTATCTGCTACGAATGCAATGGTTGCAAAAGAGCTTAGAGGCAAGGTAACATAG
AA sequence Show only first row Show all	>Potri.008G142900.1 pacid=42808442 polypeptide=Potri.008G142900.1.p locus=Potri.008G142900 ID=Potri.008G142900.1.v4.1 annot-version=v4.1 MVSTLNSPKTLKSETSFPMAIPSSSPDWSVPSINSCRKPHKVIFTQTCKNLHFLPLPCFNIPVFHVNSSSCPSPIIEEESSTNSPVIPLDLRLEDTQHYP IPDHSDKLNDFLCGVLRDPKSEELAYEYYKKAKEKQEFRPKRPMLKLLIRYLIQSEKWGLVLPVADDFKKYSVLPDSYTFSTLVSSCIRARKFKIVEGLL EISISDSKIAVLAFDSAMKGYNKLHMYGSTLSVHEKMKLAGIPLDSGCYFQTMKARHKLGDAERVVEMFNEFESRKIDSKPMILSQMYKILCESLGRSGQ VFEALEYFRDMKKKGILEDSSMYSSLICSLVNIREVKLAEELYKEAQEKRMLKDPETFLKLVLIYMEEGQMEKTVEIVKEMKGTAKLKVSDCIFCAVVNG FSKRRGFDAAVKVYEELKYDGCEPGQVTYASVINAYCRVGLYSKAEVVFFEMEAKGFDKCVVAYSSIISMYGKTGRPRDAMRLVAKMKLKGCQPNTWIYN SLVDMHGRAKDLRRVEKLWKEMKRRKVAPDKVTYTSIISAYSKSKEYEMCVRFFHEYRINGGVIDGAIAGIMVGVFSKISRIDELLKLLRDMKSEGAPID ERLYVSATNAMVAKELRGKVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.008G142900 [exp]	0	1
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	1.41	0.9824
AT5G19875			unknown protein		Potri.001G231300 [exp]	1.73	0.9834
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Potri.013G001600 [exp]	2.82	0.9671	Pt-RCI2.1
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	2.82	0.9806
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	3.00	0.9820	Pt-SIGE.3
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.003G085500 [exp]	5.00	0.9760	Pt-BMY.2
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	6.92	0.9735
AT3G52740			unknown protein		Potri.004G202900 [exp]	8.48	0.9647
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	8.94	0.9572
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	9.16	0.9594

Compare expression of checked genes

Potri.008G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.