Plant FIBer expression Database

Potri.008G142920 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G011350
[exp]
166 / 5e-49 ND /
Potri.017G015134
[exp]
67 / 3e-13 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0523 GAG-polyprotein PF03732 Retrotrans_gag Retrotransposon gag protein
Representative CDS sequence
>Potri.008G142920.1 pacid=42808868 polypeptide=Potri.008G142920.1.p locus=Potri.008G142920 ID=Potri.008G142920.1.v4.1 annot-version=v4.1
ATGGAGAACGAAGAAAGAGCTCATTTAGAGTCACATTATCAGACTGAGTTGGAGTCTGTGAAAAATGAAGTTTCTCGACTGACCAATCTGCTTGAGCAAC
TCTTAAGAGCCAAGAACGGGGAGGGAACGTCTACCCAACCACCTATAGGAGCACCGTCAGTTCATGTCCCGGGGGTATCTCAGAACTTGGGGGCAGATTC
AGTGACGGGGCAGCAATTTGCGCCTGCCATTCCCATTCAGCCCCCTCAAGCTCACATCACTGTAGAGGGGCCTTCCGATAATAGGTCCACTGGATTTATG
AACAATGACAAGATATCAGCCTTGGAAGAAAGGTTAAGAGCGGTCGAGGGAAATGACTGGTTTGACCTCATGCGAGCGTCTGAAATATGCTTGGTGCCAA
ACATCACGGTACCAAAAGATTTTAGGATACCGGAGTTTATAAGGTACACTGGGTTGGAATGCCCAAACACTCACCTTCGATCTTATTACAATAAGATGGC
TGAGGTGATTCATGACGATAAGTTACTGATCTACTTTTTCCAAGACAGTCTATCGGGGTCGGCGCTAAGTTGGTACATGAGGCTGGATAATACCAGGATT
AAGAAATGGAAGGATTTAGTGGAGGCTTTCCTTAAGCAATACAAGTTCAATTTGGAAATTGCTCCAGATCGAACAAGCCTTATGTCAATGGAAAAGAGAA
GCCAAGAGTCAGTAAAGGCTTATGCGCAAAGATGGAGGGACGAGGCCACTCATGTGCAACCTCCTTTGATAGAAACGGAGATGGTGACTTTGTTCGCCAA
TACATTCAAGGCACCCTACTATGAGCATTTAATGGGTAGTTCAGCTCAGCATTTCTATGATGCTGTACGCATAGCGGAAAGAATAGAGCAAGGGATTAAA
GCTGGACGCATAATTGAGCCATTGGAGACAAAGGGTTTTATTGAAAGAAAAATGAAAGGTCCCGTTAACAACTTCGAAGATGGGTCCAATGACAAGATAA
CGGATTCATATAACCCACAAATACCTACCTCTCATGTGGCCCACATAAACTTTAACAAATCTTTTTCCCCTAATCGAGCAAATAACCAGTCAAACATCCA
AAACAACGACCAAAGACCAAACACAAGATACATTGCAGAACAACTACCGCCATTACCCATGCCTTTGAAGGAAATGTATGCCAAACTACTGAGCATTGGA
CAAATAGCTCCTATCCCTACATTACCACTACAACCACCATTCCCCATCTGGTATAAGCCCGAGTTGACTTGCGAGTACCATGCTGGTATTCCCGGACATT
GTCTTGAAACGTGCTACGCTTTCAAGAGAATGTTGTTGAAGCTCATCAAGATAGGATGGGTGTCGTTTGAAGACACACCCAATATCAATTCAAATCTATT
GCCTAGTTATGACAAAAGGTGCTGGCAGCCATGCCAACAGTGGGAGAAATCGGCAGCGCAGATTTATGAGGCTCCAGGCAGGAAAACTCGTCAGGGGCAT
AGGCTGACGAGAACATGGGCTGTCGAGGAATTCGGCAGCGAAGACATTGGCAGCCTGCACGCAGATGCGAATTTGGCAGCACAGGAATTGGCAGCCTGCA
CGCAGATGCGAATTCGGAAGCGCGCAGCAGCTTGTGCAAGTCAGGGGCTCGACTTGGCACGATCTAAAACTTGGACGAAGGACTGTCCAAGGCATACGAG
TGACTCAACAGCTGACGAAGCAAGAGCTGGCAGATGGGGCTGCCAGGTGAGCATGCAGAACGTGGGTTAG
AA sequence
>Potri.008G142920.1 pacid=42808868 polypeptide=Potri.008G142920.1.p locus=Potri.008G142920 ID=Potri.008G142920.1.v4.1 annot-version=v4.1
MENEERAHLESHYQTELESVKNEVSRLTNLLEQLLRAKNGEGTSTQPPIGAPSVHVPGVSQNLGADSVTGQQFAPAIPIQPPQAHITVEGPSDNRSTGFM
NNDKISALEERLRAVEGNDWFDLMRASEICLVPNITVPKDFRIPEFIRYTGLECPNTHLRSYYNKMAEVIHDDKLLIYFFQDSLSGSALSWYMRLDNTRI
KKWKDLVEAFLKQYKFNLEIAPDRTSLMSMEKRSQESVKAYAQRWRDEATHVQPPLIETEMVTLFANTFKAPYYEHLMGSSAQHFYDAVRIAERIEQGIK
AGRIIEPLETKGFIERKMKGPVNNFEDGSNDKITDSYNPQIPTSHVAHINFNKSFSPNRANNQSNIQNNDQRPNTRYIAEQLPPLPMPLKEMYAKLLSIG
QIAPIPTLPLQPPFPIWYKPELTCEYHAGIPGHCLETCYAFKRMLLKLIKIGWVSFEDTPNINSNLLPSYDKRCWQPCQQWEKSAAQIYEAPGRKTRQGH
RLTRTWAVEEFGSEDIGSLHADANLAAQELAACTQMRIRKRAAACASQGLDLARSKTWTKDCPRHTSDSTADEARAGRWGCQVSMQNVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G142920
[exp]
0 1
AT4G36520 Chaperone DnaJ-domain superfam... Potri.005G120700
[exp]
3.31 0.9164
Potri.014G186308
[exp]
14.83 0.9006
ATCG01300 ATCG01300.1, RP... ribosomal protein L23 (.1) Potri.013G138612
[exp]
19.28 0.9012
AT2G34500 CYP710A1 cytochrome P450, family 710, s... Potri.004G131700
[exp]
23.74 0.8978 CYP710.1
AT2G22795 unknown protein Potri.007G008600
[exp]
27.45 0.8883
ATCG01300 ATCG01300.1, RP... ribosomal protein L23 (.1) Potri.005G154350
[exp]
27.56 0.8957
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.005G150450
[exp]
31.74 0.8881
AT5G17590 Putative membrane lipoprotein ... Potri.019G043701
[exp]
33.49 0.8801
AT5G06790 unknown protein Potri.006G191100
[exp]
34.46 0.8895
Potri.014G073900
[exp]
36.08 0.8725

Potri.008G142920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.