Plant FIBer expression Database

Potri.008G142940 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G073216
[exp]
95 / 7e-26 ND /
Potri.001G108450
[exp]
94 / 2e-25 ND /
Potri.006G166850
[exp]
85 / 2e-22 ND /
Potri.010G007877
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G142940.1 pacid=42808699 polypeptide=Potri.008G142940.1.p locus=Potri.008G142940 ID=Potri.008G142940.1.v4.1 annot-version=v4.1
ATGGCGTTCTTCCCTCTGTTTTTGTTCCTGCTCCTTCTCTGTTTTCCCGTGGGCTGCTGCTTCGTTGCACCGCTGGAGGAGAAGGAACTGCTGAGAAGAA
AATGGTTGCTGCTGCTGTGGGGTTCGGTGGAGGCTGGTCTTAAGAGAAGCTGCTGGATCGTGGGGGAGAATCTGGTGGTGTTGGGAGGAAGCCGACGATG
CCTCACGGTGGTCAGGAAGGTGGCGGTGTACTTCCAAACGGTGGAGGGAGAGAGCAGAGAGAGAGGCACAAGTGGAGCGGGGCAGCAGCGTGCGCATGGG
GAGCAGGGGACACCAAGCCAGGGCAGCCTGCGCTGCTCCCACGCCTGCGCTGCTCCCCACTCCTGA
AA sequence
>Potri.008G142940.1 pacid=42808699 polypeptide=Potri.008G142940.1.p locus=Potri.008G142940 ID=Potri.008G142940.1.v4.1 annot-version=v4.1
MAFFPLFLFLLLLCFPVGCCFVAPLEEKELLRRKWLLLLWGSVEAGLKRSCWIVGENLVVLGGSRRCLTVVRKVAVYFQTVEGESRERGTSGAGQQRAHG
EQGTPSQGSLRCSHACAAPHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G142940
[exp]
0 1
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Potri.019G079401
[exp]
8.00 0.7950
AT1G68040 S-adenosyl-L-methionine-depend... Potri.008G136300
[exp]
16.55 0.8438
Potri.012G129066
[exp]
18.13 0.7311
AT4G11410 NAD(P)-binding Rossmann-fold s... Potri.003G128901
[exp]
20.71 0.7848
AT5G20260 Exostosin family protein (.1) Potri.006G064600
[exp]
21.70 0.8303
AT2G43480 Peroxidase superfamily protein... Potri.007G132800
[exp]
22.89 0.8281
Potri.001G120625
[exp]
23.06 0.7512
Potri.004G225350
[exp]
27.56 0.7894
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.016G021500
[exp]
31.93 0.8039
AT2G43870 Pectin lyase-like superfamily ... Potri.007G144100
[exp]
35.91 0.7969

Potri.008G142940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.