Plant FIBer expression Database

Potri.008G142980 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18420 245 / 4e-82 Protein prenylyltransferase superfamily protein (.1)
AT4G39470 102 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT2G37400 101 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G53560 99 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT5G02590 91 / 4e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G09490 71 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G143600
[exp]
296 / 3e-102 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1)
Potri.010G098500
[exp]
289 / 2e-99 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1)
Potri.007G079200
[exp]
123 / 3e-34 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.005G085700
[exp]
120 / 4e-33 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.016G080000
[exp]
97 / 1e-24 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.006G213600
[exp]
89 / 9e-22 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.016G081200
[exp]
58 / 1e-11 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031923
[exp]
182 / 2e-57 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1)
Lus10035087
[exp]
135 / 2e-41 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1)
Lus10024433
[exp]
88 / 5e-21 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10025299
[exp]
87 / 1e-20 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10035707
[exp]
62 / 9e-12 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF07719 TPR_2 Tetratricopeptide repeat
Representative CDS sequence
>Potri.008G142980.1 pacid=42808091 polypeptide=Potri.008G142980.1.p locus=Potri.008G142980 ID=Potri.008G142980.1.v4.1 annot-version=v4.1
ATGGCAAGATTGCTGAGCGAAATGGGTCGAGTACAAGATGCTCGCAATGTGTTTGAAGAAATTCTTGTCTATAATCCTTTGTCTTTTGAGGCTTTGTTCG
AGAATGCACTACTAATGGACCGCTGTGGAGAAGGAGAGGCGGTTATTAGAAGGTTACAAGAGGCTTTAGATATTGCAGGAGAGGAGAATAAAGTGAAAGA
AGCGAGGAACGTGAGGCTGATTATGGCACAGATGCAGTTCCTGCAAAAGAATGTGGAGAAGGCGTTGAAGAGTTATCAAGAGTTGTCAAAAGAGGATCCT
AAAGATTTCGGGCCTTATTTTTGTAGAGGGATTATATATAGTTTACTTGATAGAAATGAGGGGGTAAAAGAGCAGTTTGCCAAGTATCGTGAGCTTTCGC
CAAAGAAGTTTGAGGTGGAGGGGTATTTGAGGACCTCATTATCAAGGATGAAGCTTTTTGGGTCAAATGAGAAGAACTGA
AA sequence
>Potri.008G142980.1 pacid=42808091 polypeptide=Potri.008G142980.1.p locus=Potri.008G142980 ID=Potri.008G142980.1.v4.1 annot-version=v4.1
MARLLSEMGRVQDARNVFEEILVYNPLSFEALFENALLMDRCGEGEAVIRRLQEALDIAGEENKVKEARNVRLIMAQMQFLQKNVEKALKSYQELSKEDP
KDFGPYFCRGIIYSLLDRNEGVKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNEKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18420 Protein prenylyltransferase su... Potri.008G142980
[exp]
0 1
AT4G16850 unknown protein Potri.018G097900
[exp]
2.82 0.9223
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.015G068500
[exp]
4.58 0.9319
AT2G17800 ARAC1, ATGP2, A... RHO-RELATED GTPASES FROM PLANT... Potri.005G110700
[exp]
6.92 0.9126 Pt-RHO1.2
AT1G12000 Phosphofructokinase family pro... Potri.011G015600
[exp]
7.68 0.9384
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
9.38 0.9364
AT3G13410 unknown protein Potri.008G223987
[exp]
9.48 0.9128
AT1G20530 Protein of unknown function (D... Potri.005G249400
[exp]
13.03 0.9198
AT3G57830 Leucine-rich repeat protein ki... Potri.016G050800
[exp]
17.88 0.9069
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Potri.005G085500
[exp]
19.07 0.9119
AT2G47470 ATPDI11, ATPDIL... UNFERTILIZED EMBRYO SAC 5, MAT... Potri.002G198300
[exp]
19.44 0.9114

Potri.008G142980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.