Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18420 357 / 3e-123 Protein prenylyltransferase superfamily protein (.1) AT2G37400 140 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39470 139 / 4e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53560 134 / 3e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 133 / 3e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 100 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098500 [exp] 523 / 0 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.008G142980 [exp] 295 / 2e-101 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.007G079200 [exp] 162 / 4e-47 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 152 / 4e-43 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 142 / 3e-39 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 137 / 2e-37 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G081200 [exp] 62 / 2e-12 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G064900 [exp] 43 / 0.0002 AT2G34540 110 / 3e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031923 [exp] 261 / 2e-85 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035087 [exp] 149 / 3e-44 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1) Lus10024433 [exp] 126 / 2e-33 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 124 / 3e-32 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035707 [exp] 96 / 3e-22 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.008G143600.1 pacid=42806305 polypeptide=Potri.008G143600.1.p locus=Potri.008G143600 ID=Potri.008G143600.1.v4.1 annot-version=v4.1 ATGAACTCAACTCTAGCCGCTTCTTTTATCCACCTCAAAACCCCTTCTTCCTTCAACTCACCTTCACCTCTCCATTCCACCACTCTCAAATTCCACAATT CCACCTCTACCCCTTCTCTCAAAATACCAAAAGCAGCCGCCTCCTCCTCCTCGAATCACACCTCCAAAAGCCCGTTAACCCAAAAGCTGAAAACCCTCAC CAAAACAGCAATTTTGATTGGCGTCGCAGCTTCCATTGCTGGCAAATTCCCTGTATTGCCTGCAAAAGCCGAAACCCCCGCAGCTCTCACTGAACAAAAC CCGGCCCTTGAAGAAGAAGAAGAAGAAGAGGTAGATATAAAGAAACATCAAAACCAGAACCAAAGTGACCCATCAACGCCATTACAAGCATTCCTTGAAT CTAATGCTGAAGCGATCGAGTCTCTGAAATCACTTTTACAACAAAAACTTGAAAATGGCCAAGACGAAGAGGCTTTAAAGATTATAAAGCTTTTAGTGTC TGCGCAACCGGAGGTAACTGAATGGAAGTTTTTAATGGCAAGATTGCTGAACGAAACGGGTCGTGCACAAGATGCTCGCAATGTGTTTGAAGAAATTCTT GTCGCAAATCCTTTGTCTTTTGAGGCTTTGTTCGAGAATGCACTACTAATGGACCGCTGTGGAGAAGGAGAGGCGGTTATTAGAAGGTTACAAGGGGCTT TAGATATTGCAGAAGAGGAGAATAAAGTGAAAGAAGCGAGGGACGTGAGGCTGATTATGGCACAGATACACTTCCTGCAAAAGAATGTGGAGGAGGCGCT GAAGAGTTATCAAGAGTTGTCAAAAGAGGATCCTGAAGATTTCAGGCCTTATTTTTGTAGAGGGATGATATATAGTTTACTTGATAGAAATGAGGAGGCA AAAGAGCAGTTTGCCAAGTATCGTGAGCTTTCGCCAAAGAAGTTTGAGGTGGAGGGGTATTTGAGGACCTCATTATCAAGGATGAAGCTTTTTGGGTCAA ATGAGAAGAACTGA
AA sequence Show only first row Show all	>Potri.008G143600.1 pacid=42806305 polypeptide=Potri.008G143600.1.p locus=Potri.008G143600 ID=Potri.008G143600.1.v4.1 annot-version=v4.1 MNSTLAASFIHLKTPSSFNSPSPLHSTTLKFHNSTSTPSLKIPKAAASSSSNHTSKSPLTQKLKTLTKTAILIGVAASIAGKFPVLPAKAETPAALTEQN PALEEEEEEEVDIKKHQNQNQSDPSTPLQAFLESNAEAIESLKSLLQQKLENGQDEEALKIIKLLVSAQPEVTEWKFLMARLLNETGRAQDARNVFEEIL VANPLSFEALFENALLMDRCGEGEAVIRRLQGALDIAEEENKVKEARDVRLIMAQIHFLQKNVEEALKSYQELSKEDPEDFRPYFCRGMIYSLLDRNEEA KEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18420			Protein prenylyltransferase su...		Potri.008G143600 [exp]	0	1
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	16.70	0.7879
AT5G63150			unknown protein		Potri.012G090700 [exp]	20.12	0.7779
AT4G20020			unknown protein		Potri.003G015100 [exp]	23.87	0.7877
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.004G028800 [exp]	45.13	0.7539
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Potri.012G052100 [exp]	59.12	0.7521
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	78.93	0.7443
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	87.66	0.7487
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.015G011300 [exp]	92.81	0.6809
AT5G13200			GRAM domain family protein (.1...		Potri.003G165500 [exp]	106.18	0.6631
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.016G117300 [exp]	115.60	0.6963

Compare expression of checked genes

Potri.008G143600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.