Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38870 98 / 4e-22 F-box and associated interaction domains-containing protein (.1) AT1G53790 91 / 2e-19 F-box and associated interaction domains-containing protein (.1.2) AT1G50870 86 / 4e-18 F-box and associated interaction domains-containing protein (.1) AT5G65850 85 / 9e-18 F-box and associated interaction domains-containing protein (.1) AT4G09190 84 / 3e-17 F-box and associated interaction domains-containing protein (.1) AT2G40920 83 / 5e-17 F-box and associated interaction domains-containing protein (.1.2) AT1G19160 82 / 5e-17 F-box family protein (.1) AT1G46984 80 / 3e-16 F-box family protein (.1) AT3G52320 79 / 7e-16 F-box and associated interaction domains-containing protein (.1) AT5G18160 78 / 1e-15 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 134 / 8e-35 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 77 / 2e-15 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.016G012700 [exp] 77 / 6e-15 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 76 / 7e-15 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.010G154500 [exp] 75 / 3e-14 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G137200 [exp] 73 / 1e-13 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 71 / 3e-13 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.017G058900 [exp] 70 / 7e-13 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G215800 [exp] 70 / 1e-12 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011210 [exp] 78 / 3e-15 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 75 / 4e-14 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 74 / 1e-13 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011015 [exp] 70 / 9e-13 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10036105 [exp] 70 / 1e-12 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 69 / 3e-12 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 68 / 5e-12 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10007285 [exp] 68 / 5e-12 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10013873 [exp] 68 / 5e-12 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10001579 [exp] 66 / 2e-11 AT2G40920 67 / 6e-12 F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.008G144000.1 pacid=42808257 polypeptide=Potri.008G144000.1.p locus=Potri.008G144000 ID=Potri.008G144000.1.v4.1 annot-version=v4.1 ATGGGCAATAGCATTAGCCAGATGAGAACATCGTCGTCGTCCTCAAGAAAATCCATTAATATTAATCGCCGGCATATTCCGGACGACGTGATTCTTGATA TCCTTACAAGACTCCCCGCTAAATCCGTTGTACGATTCAGGTGTGTATCCAGGACCTGGTGCTCCTTTACTCACGATCCTTTCTTTGCTAGCTTGCATCA CGCTCGTTCTCTAACAAGGGATAATGGCAGTGCTCTCCTTCTTTCCTACCCTGATCCCTCATCCTCATCAACATCTTTCTCTTTTTTCGAACGCAAACAA GGGTTTCGCAACCTTCAAATCTCCCATGTCGACCAACAATATACTCACCTTTCTGAAATCATTAGAGGCATTCTCTGCATAAATTATCGCAGAAGCCATC GTGTTGATATATGTAATATCACCACTCAAGAGACTATAACCCTTCCACGGAGTACAAATATACCAATTAGGTCGGGTGCTGGTGTTGATTTCGATATTGT TTATGAACCTCGATATTCTTTCGGTTTCAATTCCTCTACAAGGGATTACAAAGTGCTTAATATTTGTAGCATCACTAGATACAAATTGCAAGTCAATCCT AACAATGGGTTGTCCACTCGGGAAGTTAGCCAGAGAACTGTGGAGTTCGAGATTTTCACTATAGGCTGCGACAGGGGCGCGGGTTCATGGAGAAAAATTG ATCCTGGCTACCCTTATGATCAAGAACTTCATGGTCTATCATGTGAAAGTGTCTGCGCTGATGGAGTTATACATTGGAGGCATAGATTTTTTGACCAGGA AATTTTGCTCGCATTCGACCTTAAACAAGAGAAGTTCCAAATCATCCAAGTCCCAAAAGAAGCATTAGAATTTCATCTCATGAAACAAGTCAAAGGATGT CTAGTGCTAATGGGTCATGTAATTAGTGGTTATAATCGGAATAAAATTGTTCTGTGGATACTAGAGGATCGACTTAACCAAATCTGGATGAAGGAGAACG TTGTTTTCCCCTCACATAGCCCATGTCTGTGGCCTGTTGGCAGTTTCAAGACGGGGCTGATTTTGCTTGCGCAACATGGATACGCAGATCCAGCTGCATG GGCGGCATACTATTGTGACCTTGAGACAAAGAATTTATGCATGATTCAAGTCCCCGAGCTGAAGTCAGTTAAACTTCCTTGCGGTGAAGCTGGAAAACCT TCTGATGTTGTACTTACAGAGCATGCTGAGAATCTTTTGTCACTAACAAGTAATGTCTACTCAAGCATGCAAGAAGAAAAGGTTAAGCAATTTGCAGGAT AA
AA sequence Show only first row Show all	>Potri.008G144000.1 pacid=42808257 polypeptide=Potri.008G144000.1.p locus=Potri.008G144000 ID=Potri.008G144000.1.v4.1 annot-version=v4.1 MGNSISQMRTSSSSSRKSININRRHIPDDVILDILTRLPAKSVVRFRCVSRTWCSFTHDPFFASLHHARSLTRDNGSALLLSYPDPSSSSTSFSFFERKQ GFRNLQISHVDQQYTHLSEIIRGILCINYRRSHRVDICNITTQETITLPRSTNIPIRSGAGVDFDIVYEPRYSFGFNSSTRDYKVLNICSITRYKLQVNP NNGLSTREVSQRTVEFEIFTIGCDRGAGSWRKIDPGYPYDQELHGLSCESVCADGVIHWRHRFFDQEILLAFDLKQEKFQIIQVPKEALEFHLMKQVKGC LVLMGHVISGYNRNKIVLWILEDRLNQIWMKENVVFPSHSPCLWPVGSFKTGLILLAQHGYADPAAWAAYYCDLETKNLCMIQVPELKSVKLPCGEAGKP SDVVLTEHAENLLSLTSNVYSSMQEEKVKQFAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38870			F-box and associated interacti...		Potri.008G144000 [exp]	0	1
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.006G185300 [exp]	3.74	0.7621
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	5.00	0.7915
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	6.92	0.7885
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053800 [exp]	7.74	0.7661
AT4G21510			F-box family protein (.1)		Potri.011G042800 [exp]	11.40	0.7416
AT3G02970		EXL6	EXORDIUM like 6 (.1)		Potri.013G080100 [exp]	12.00	0.7537
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Potri.010G115700 [exp]	12.48	0.7085
AT5G37475			Translation initiation factor ...		Potri.017G138300 [exp]	19.89	0.7126
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.003G095701 [exp]	21.44	0.7025
AT1G52140			unknown protein		Potri.014G139900 [exp]	23.74	0.7684

Compare expression of checked genes

Potri.008G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.