Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	A1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19990 741 / 0 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 728 / 0 RPT6A AAA-type ATPase family protein (.1) AT1G53750 343 / 7e-115 RPT1A regulatory particle triple-A 1A (.1) AT2G20140 333 / 9e-111 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 332 / 2e-110 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 335 / 1e-109 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 320 / 2e-106 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 318 / 9e-106 AAA-type ATPase family protein (.1.2) AT1G09100 316 / 2e-104 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 315 / 6e-104 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098300 [exp] 749 / 0 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.001G161700 [exp] 344 / 2e-115 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 343 / 7e-115 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 339 / 2e-113 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.014G194700 [exp] 335 / 1e-111 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 333 / 6e-111 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.005G231700 [exp] 315 / 2e-104 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 314 / 8e-104 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 313 / 2e-103 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017762 [exp] 738 / 0 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10033055 [exp] 694 / 0 AT5G19990 749 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 344 / 7e-115 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 344 / 1e-113 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 332 / 5e-112 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 331 / 7e-110 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 335 / 9e-110 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10019995 [exp] 334 / 7e-106 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017972 [exp] 313 / 2e-103 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10029887 [exp] 313 / 3e-103 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.008G144100.1 pacid=42807521 polypeptide=Potri.008G144100.1.p locus=Potri.008G144100 ID=Potri.008G144100.1.v4.1 annot-version=v4.1 ATGGCAGCAGTAGGAGTGGAGAGGAGGCAACAGCAGCAGCAAACAGAATCAACAATGACGATGACGGCGGAGGAGAGCTGCTTGGCGAAAACGGGGGCGG CGAAGCAAGGAGAGGGATTAAAGCAGTATTACATCCAACACATCCATGAGCTTCTGCTACATGTCCGTCAAAAAACCCACAATCTCAATCGCCTAGAAGC TCAACGCAATGACATTAATTCCAGAGTGAGGATGCTTAGAGAAGAGTTGCAGCTACTTCAAGAACCTGGGTCATATGTTGGTGAAGTTGTCAAAGTAATG GGGAAGAACAAGGTGTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTTGATATTGATAAAAGTATTGATATCACAAAGATCACTCCATCAACAAGGG TTGCCCTTCGCAACGACAGCTATGTTCTTCACTTGATCTTGCCTAGCAAAGTGGATCCTCTGGTCAACCTCATGAAGGTTGAAAAAGTTCCAGATTCTAC CTATGACATGATAGGTGGTCTTGACCAACAAATTAAAGAGATAAAGGAGGTCATTGAACTTCCAATTAAACACCCTGAATTGTTTGAGAGTCTTGGAATC GCTCAACCAAAGGGTGTTCTCCTCTATGGGCCTCCTGGCACTGGAAAAACTCTACTGGCTAGGGCAGTGGCTCACCACACTGACTGTACTTTCATCAGGG TTTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGCTCTAGAATGGTCAGAGAGCTCTTTGTTATGGCAAGAGAGCATGCTCCATCAATCATTTT CATGGATGAAATTGACAGTATCGGATCTGCTCGAATGGAATCTGGGAGCGGCAATGGTGACAGTGAGGTGCAGCGAACTATGCTGGAGCTTCTAAATCAG CTGGATGGATTTGAAGCATCAAACAAGATAAAGGTTTTGATGGCTACAAATCGGATTGATATTCTGGATCAAGCTCTCCTTCGGCCAGGACGAATTGACA GGAAGATTGAATTTCCAAATCCCAACGAAGACTCACGTTGTGATATCTTGAAAATCCATTCAAGAAGGATGAATTTAATGCGTGGGATTGATTTGAAGAA GATAGCTGGGAAGATGAATGGTGCTTCTGGTGCAGAGCTCAAGGCGGTGTGCACAGAGGCTGGAATGTTTGCTCTAAGAGAGAGGAGGGTCCATGTTACA CAAGAAGATTTTGAGATGGCAGTAGCAAAGGTCATGAAGAAGGAGACAGAGAAGAACATGTCATTGCGGAAGCTCTGGAAGTAG
AA sequence Show only first row Show all	>Potri.008G144100.1 pacid=42807521 polypeptide=Potri.008G144100.1.p locus=Potri.008G144100 ID=Potri.008G144100.1.v4.1 annot-version=v4.1 MAAVGVERRQQQQQTESTMTMTAEESCLAKTGAAKQGEGLKQYYIQHIHELLLHVRQKTHNLNRLEAQRNDINSRVRMLREELQLLQEPGSYVGEVVKVM GKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ LDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSRCDILKIHSRRMNLMRGIDLKKIAGKMNGASGAELKAVCTEAGMFALRERRVHVT QEDFEMAVAKVMKKETEKNMSLRKLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.008G144100 [exp]	0	1	A1.3
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	2.44	0.8994	PBB1.1
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	4.00	0.8871	RPT1.5
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.003G142700 [exp]	4.24	0.8809
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	5.00	0.9062
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Potri.013G062900 [exp]	6.32	0.8842
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	6.70	0.8928	PBF1.2
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.001G469300 [exp]	7.93	0.8535
AT1G67250			Proteasome maturation factor U...		Potri.006G249600 [exp]	9.48	0.8713
AT3G51260		PAD1	20S proteasome alpha subunit ...		Potri.004G174200 [exp]	10.48	0.8531	Pt-PAD1.2
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	14.83	0.8705	TIF4.1

Compare expression of checked genes

Potri.008G144100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.