Plant FIBer expression Database

Potri.008G144200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G02160 383 / 3e-123 C3HZnF CCCH-type zinc finger family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G098200
[exp]
1066 / 0 AT2G02160 349 / 3e-110 CCCH-type zinc finger family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014490
[exp]
186 / 9e-51 AT2G02160 174 / 3e-47 CCCH-type zinc finger family protein (.1)
Lus10030063
[exp]
142 / 4e-35 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0537 CCCH_zf PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CL0537 CCCH_zf PF15663 zf-CCCH_3 Zinc-finger containing family
Representative CDS sequence
>Potri.008G144200.2 pacid=42808307 polypeptide=Potri.008G144200.2.p locus=Potri.008G144200 ID=Potri.008G144200.2.v4.1 annot-version=v4.1
ATGGTTGCAGCCACCCAACCACAGCAGCACCCATCTACAGCTGCTGCTTCGACAACAACAGCAAACGCAACATCCGTTGAAGATGAAGCCCTGAAAAGGA
ATACTGATTGCGTTTACTTTCTTGCTTCTCCTTTAACCTGCAAAAAGGGAAGTGAGTGTGAATATCGCCACAGTGAATATGCCAGGGTTAATCCCAGGGA
TTGCTATTATTGGTTGAATGGTAATTGCTTGAATCCCAAGTGTGGGTTTCGTCATCCTCCCCTGGATGGCTTGTTTGGAACCCAAGCAATAGCCTCTGCT
GGATCTTCCTTGCCACCATCGCATACTGCTGTGGCATCTGCCACACATGCTCCTCACAATCCAGGCAAACAGGCAGTCCCCTGCATTTTCTTCCAGCAGG
GAATATGCGTAAAAGGTGACAAATGTGCTTTCTCCCATGGACCAAATCTTGCTGGTAATAAAGTTTCTCAACCAATGGCACCTACCCCGGGGGCTGAGGC
CCTTCCTCCAAAAAAGGCTTTTGGTGGCCTTCAAAAGTGTGCTCAAGAACATAAGATTCCACAAACAAAAATCTCAAAGGCTGTTGAAGCACCCTCTGTT
GCTAAACCTGTGTCAAAAGCTGAAATTGTTCATGCAAGAAACATTGCCGGTGTTGTAAGGAGTGCAGTGCCACCTACAAGCATGGATGGTGAAATTCCTA
GGTATAAAGCAGCAAATCTTCCTCTCATGGTCAATGGAAATTTAAGTCGTTCCAGTCGTTTGCATCAGTTACAGGTAGCAGATGATCATGTTATCCAGAA
TGGCAAGGATGCTGATGAGTATTTGAGGGAGTCCTCTCCTGGTTTTGATGTTCTTGTGGACAATGAGTTGAGGGATTCAGATTATTACCACGGTGAAGAG
CAGCTTGGAAGAACAACAGGAAATGAAGGGAGGAACTTGAACTCTGTTGATGAATATGACACGGGCCATTCTGCTGATTATGGTTTATTACATGATGACC
AAGAAATGTATCGTGATCCACGGGGCTATGATTCCTATGAACTCACGCCAGGGCAGCATGCTTGGGAGCAGCACAGGGCTTCATCAGAAAGAATGTTAAT
GGCACCAGTTCTTCCAGAAAGGCGAGGTTACGCGAAAGCTGATAGCCCTGAGCACACTGAGGAATCAGATTTGCGTTATCGTTTATCGAAACAAAGGAGG
GTTAATGGCTTGAGATCAGTTGTTAGTAATGATTTTGTCCCAGAGAACCATGTTGAGGAGCGAGGTTACCGGGGTTCTTCACGAAGAGACTCTCATCACT
TACCTTCACATGAGAGCTCCATTAGCAGTCGTCTTCGTGGTAGAATCAAGCTTCCAGGAAGATCTCCAAACAATGGTGGTGATGTGCGTGCAGAAAGGGA
AATTGACAGGGGCAGGAATCGGGGAAGATTGTCACCGGTGAGGTCCCCGGTCACCTCCCAACAAGGGAGGCTACGGGACAGAATGAAAGCTAGGGTGGAA
GAGGATTACAATGAGGGGAGAAGTTTCAGAGGTCCTCAAGTGAGAGGAGAATTAATGGATGATGGAAGTACTGATTTTGCTGGTCCTAAAAGTCTTGCAG
AGCTGAAAGGTGGGAAAAATGCTGAGGGTAAGTTGCAGCAATCCCTTGGAAAGCGCAAGCACTCGGAAGATAATCCATCATCTGATGCTGTTCTCTCATT
TGAAGGGCCAATGCCTCTTAGTGAGATTCTCAAGAGAAAGAGAGAGGGTGGAGCTGCAGCTTCTCGCAGTGGAATATCATCTGTTATTAAGGACAACAAC
AATCTGAAGGAAAGCAAGCAAAGCCTCATCAGCAATTCCAAAAAGGCAGATGCAGAGATGCAGAGTGGCATTTCCTCTGTATCGAAGGATGATAACAGTA
GCCAAATGCTAAAAAATAAAGAAGAATCCAAGGTTGCAACTGATGGTGCCATTGGAACAGAAGAAAATATTGAAATTGCTCACGGTCAGTCTTCTCAACT
TCCAAATCCAAGTGAGATTGAGACTGAAGATGGGATAATTGCTGATGATGGAATGGAAGATCATGAGTACGAAGGTGATGATCAGAGGGATGACAATTAT
GAATATGAGCAGGTTGATGAAGGAGAGTACAATTACGAAGAGGGTGAAAATATAGATGGTGAAGAGGAATATGAAGATGAAGAAGATGGAGAAGACTTTG
CCAAGAAAATTGGTGTGGTGATCTCATGA
AA sequence
>Potri.008G144200.2 pacid=42808307 polypeptide=Potri.008G144200.2.p locus=Potri.008G144200 ID=Potri.008G144200.2.v4.1 annot-version=v4.1
MVAATQPQQHPSTAAASTTTANATSVEDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCYYWLNGNCLNPKCGFRHPPLDGLFGTQAIASA
GSSLPPSHTAVASATHAPHNPGKQAVPCIFFQQGICVKGDKCAFSHGPNLAGNKVSQPMAPTPGAEALPPKKAFGGLQKCAQEHKIPQTKISKAVEAPSV
AKPVSKAEIVHARNIAGVVRSAVPPTSMDGEIPRYKAANLPLMVNGNLSRSSRLHQLQVADDHVIQNGKDADEYLRESSPGFDVLVDNELRDSDYYHGEE
QLGRTTGNEGRNLNSVDEYDTGHSADYGLLHDDQEMYRDPRGYDSYELTPGQHAWEQHRASSERMLMAPVLPERRGYAKADSPEHTEESDLRYRLSKQRR
VNGLRSVVSNDFVPENHVEERGYRGSSRRDSHHLPSHESSISSRLRGRIKLPGRSPNNGGDVRAEREIDRGRNRGRLSPVRSPVTSQQGRLRDRMKARVE
EDYNEGRSFRGPQVRGELMDDGSTDFAGPKSLAELKGGKNAEGKLQQSLGKRKHSEDNPSSDAVLSFEGPMPLSEILKRKREGGAAASRSGISSVIKDNN
NLKESKQSLISNSKKADAEMQSGISSVSKDDNSSQMLKNKEESKVATDGAIGTEENIEIAHGQSSQLPNPSEIETEDGIIADDGMEDHEYEGDDQRDDNY
EYEQVDEGEYNYEEGENIDGEEEYEDEEDGEDFAKKIGVVIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G02160 C3HZnF CCCH-type zinc finger family p... Potri.008G144200
[exp]
0 1
AT2G02160 C3HZnF CCCH-type zinc finger family p... Potri.010G098200
[exp]
2.64 0.8805
AT5G65200 ATPUB38 ARABIDOPSIS THALIANA PLANT U-B... Potri.015G071200
[exp]
4.24 0.8635
AT5G51300 splicing factor-related (.1.2.... Potri.001G126400
[exp]
6.00 0.9009
Potri.012G114166
[exp]
8.12 0.9038
AT2G35230 IKU1 HAIKU1, VQ motif-containing pr... Potri.001G142400
[exp]
8.48 0.8810
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Potri.001G357800
[exp]
8.94 0.8755
Potri.019G025833
[exp]
13.41 0.8818
Potri.019G014392
[exp]
17.43 0.8789
AT4G02720 unknown protein Potri.002G051500
[exp]
18.97 0.8789
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Potri.002G039900
[exp]
20.39 0.8656 APG9.1

Potri.008G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.