Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02170 429 / 2e-146 Remorin family protein (.1.2) AT1G30320 182 / 3e-51 Remorin family protein (.1) AT1G67590 99 / 1e-22 Remorin family protein (.1.2) AT1G53860 57 / 2e-08 Remorin family protein (.1) AT3G61260 48 / 6e-06 Remorin family protein (.1) AT2G41870 42 / 0.0004 Remorin family protein (.1) AT4G36970 43 / 0.0006 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098000 [exp] 717 / 0 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.001G358600 [exp] 187 / 1e-52 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G056800 [exp] 134 / 1e-34 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.008G178300 [exp] 129 / 4e-33 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.001G163000 [exp] 68 / 6e-12 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.002G125200 [exp] 67 / 2e-11 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.014G027900 [exp] 65 / 6e-11 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.005G138500 [exp] 58 / 8e-09 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.016G054400 [exp] 45 / 6e-05 AT2G41870 206 / 7e-66 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038522 [exp] 167 / 3e-48 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10023284 [exp] 167 / 2e-45 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10042649 [exp] 68 / 9e-12 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10003936 [exp] 64 / 2e-10 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10005708 [exp] 63 / 3e-10 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10027302 [exp] 60 / 2e-09 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10039007 [exp] 59 / 4e-09 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10037454 [exp] 59 / 6e-09 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10036996 [exp] 53 / 7e-08 AT1G67590 184 / 2e-57 Remorin family protein (.1.2) Lus10009750 [exp] 53 / 4e-07 AT1G45207 445 / 8e-151 Remorin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.008G144300.3 pacid=42808752 polypeptide=Potri.008G144300.3.p locus=Potri.008G144300 ID=Potri.008G144300.3.v4.1 annot-version=v4.1 ATGGATTACGAAAGGATCGAAAAGCCTCAGGGAGGAGGGGGAGGATTGTCACCGGGGAAACTGAGAAGCATGATTCTAGGAGTGGAAAAGAAGAGAAATC AACAAGAACAAGAGGAAGAGCTTGAATCCTCTAACGCGTTCAGATCTCAACTTAATCACCTCGATGAAACTGGTGGCGGCAGTTCTGATAATTGCAAAGA TGTAGATGTTGTCAACGTGCTTCCCGAATTCCCTGCTTCAACAACAGCTGATTCCAGGGCTGCATCACAGATGGTCAGTGATGGTAGTAGATTGAAGGAT CAATCTTTTGTCAATTCAAGAATCAGGAGCCAGGAAGTCCCATCTTTTGATTATGATAAAAGTAATGAAACTGCAATTGTGCTCTCCTCGATTTCTGATT TTCAAAAGGCTGAGCGGGCCCCACAAAGAGTACCCCTTGCTCCGTTCTCAAAACCAGCACCATCCAAATGGGATGATGCCCAGAAGTGGATAGCAAGCCC CACTTGGAACCGGCCTAAAACAGGGCATGCTCAGGTGCAAGGTGGACAAGGACCGCGGAAGACGGGTAATGCTCTGAGTCGGCAATCTTCTACAAAGGTT GTTGTAGAAGTTCCAGAACAAAAGGTGGTTACATTTGAAGAACCAGATACAAAACGGGTTGATACTAATCAAGCTAAGAAGGAAACTTGTCTGCAGAAAC TTCAAAGTTGGGAGGCTGATTCATACCCAATAGTTGATTCCTATGGCAAGCCTGTGCTTATGAATGAGAATTCTGCTGGGCAATCAGCAATCAGTCTCAG CAGGCATGATTCATCTTTGGCCATACACAGTGCAACTACATTTATCCCGCCTCCTTCAACTGCTAGGTCTGTGTCAATGAGAGATATGGGTACAGAAATG ACTCCTATTGCTAGTCAAGAGCCTTCTAGGACAGGAACTCCAGTGAGGGCAACAACACCAATTCGCAGTCCAACTTCTTCCAGGCCTTCAAGTCCTGGCA GAACCGCACCAGCTTCATCTCCAACAAATCCTCCCAATGACCATCTAGATCCAAACAGGGGATTGTCTGAAAAGGAGTTAAAACTGAAAACCAAGAGAGA AATAATGGTTCTAGGGACACAGCTAGGTAAAATGAACATTGCAGCCTGGGCTAGCAAAGAGGGGGAGGACAAGGACGCATCCACTTCACTGAAAATTATA GCAGCTGATCAACAGAGTAAAAATGTGATTGAAACACGTGCAGCAGCATGGGAGGAGGCGGAGAAGGCCAAGTATATGGCCAGGTTTAAACGTGAAGAGA TGAAAATTCATGCATGGGAGAATCATCAAAAAGCAAAAACTGAAGCTGAGATGAGAAAAATTGAGGTGGAGGTTGAAAGGATAAGGGGGCAGGCCCAAGA TAGGCTTATGAACAAACTAGCAGCAGCAAGGCACAAGGCTGAAGAGAAGCGAGCAACAGCAGAAGCCAAGAGTAACAGGCAGGCTGCGAAAACTGACAAA CAGGCAGAGTATATTCGTAGAACTGGTCGTGTTCCTTCCTCGTTTACCTTCTGTGGTTGGTGTTGGTGA
AA sequence Show only first row Show all	>Potri.008G144300.3 pacid=42808752 polypeptide=Potri.008G144300.3.p locus=Potri.008G144300 ID=Potri.008G144300.3.v4.1 annot-version=v4.1 MDYERIEKPQGGGGGLSPGKLRSMILGVEKKRNQQEQEEELESSNAFRSQLNHLDETGGGSSDNCKDVDVVNVLPEFPASTTADSRAASQMVSDGSRLKD QSFVNSRIRSQEVPSFDYDKSNETAIVLSSISDFQKAERAPQRVPLAPFSKPAPSKWDDAQKWIASPTWNRPKTGHAQVQGGQGPRKTGNALSRQSSTKV VVEVPEQKVVTFEEPDTKRVDTNQAKKETCLQKLQSWEADSYPIVDSYGKPVLMNENSAGQSAISLSRHDSSLAIHSATTFIPPPSTARSVSMRDMGTEM TPIASQEPSRTGTPVRATTPIRSPTSSRPSSPGRTAPASSPTNPPNDHLDPNRGLSEKELKLKTKREIMVLGTQLGKMNIAAWASKEGEDKDASTSLKII AADQQSKNVIETRAAAWEEAEKAKYMARFKREEMKIHAWENHQKAKTEAEMRKIEVEVERIRGQAQDRLMNKLAAARHKAEEKRATAEAKSNRQAAKTDK QAEYIRRTGRVPSSFTFCGWCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	4.24	0.7169
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	4.24	0.7290	DCL903
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	7.21	0.7162
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	7.74	0.7153	Pt-ARP4.1
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	7.93	0.7075
AT5G01660			unknown protein		Potri.016G127600 [exp]	8.48	0.7114
AT2G25910			3'-5' exonuclease domain-conta...		Potri.006G234000 [exp]	8.83	0.6856
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	11.31	0.6413	ARP7.1,ARP903
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.006G189000 [exp]	12.72	0.6719
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	13.41	0.6857	Pt-APP.2

Compare expression of checked genes

Potri.008G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.