Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOM3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02180 425 / 3e-151 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 401 / 9e-142 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2) AT4G21790 295 / 5e-100 ATTOM1, TOM1 tobamovirus multiplication 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097900 [exp] 484 / 7e-175 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.011G001000 [exp] 283 / 1e-95 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1) Potri.004G018100 [exp] 282 / 4e-95 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006770 [exp] 300 / 4e-102 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10020054 [exp] 296 / 1e-100 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1) Lus10018348 [exp] 290 / 2e-98 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1) Lus10007663 [exp] 288 / 2e-97 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [poplar] [flax] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Potri.008G144400.2 pacid=42808855 polypeptide=Potri.008G144400.2.p locus=Potri.008G144400 ID=Potri.008G144400.2.v4.1 annot-version=v4.1 ATGGAGGAAGGAAGCAGCGGCGTAGAAATGGCCGGGGCGGTGATCGCTTTCGAATTGAAAGAGGCGTCGAGTTGGTGGCAAGATATTAACGAATCACCGG TCTGGCAAGATCGCATCTTTCACGTTCTCGCCGCCCTCTACGGTCTCGTTGCCGCCGTTGCTCTTATTCAATTGATAAGGATACAATTGAGAGTTCCAGA ATACGGCTGGACTACGCAGAAGGTTTTTCATTTTCTCAACTTCCTCGTGAATGGGGCTCGATGCCTATTGTTTGTTTTTCGCCGGAATATAGAAAGCATC CATCCATCGATTTTCCAACATATCCTCCTTGATTCCCCTAGTCTTGCATTCTTCACAACATACGCTCTTTTGGTTCTGTTCTGGGCAGAGATTTACTATC AGGCACGTGCCATATCTACTGATGGACTCAGGCCAAGTTTCTTTACAATTAATGCGGTGGTTTATGCCATTCAGATTGCTATGTGGTTGGTGTTGGCTTG GAAAACTGTTCCGATTGCTGTCATCCTATCAAAGATGTTCTTTGCAGGTGTGTCTTTGTTTGCAGCTCTTGGTTTCCTACTCTATGGAGGAAGGCTCTTC TTAATGTTGCGGCGATTCCCTGTGGAATCCAAAGGGAGGCGTAAGAAATTGCAAGAGGTTGGCTATGTGACCACCATATGTTTCTTATGCTTCCTCGTTA GATGCATTATGATATGCTTCAATGCATTTGATAAAGCTGCAGACCTTGATGTGTTGGATCATCCTGTTCTAAACTTCATATATTACTTGCTGGTGGAGAT TTTACCTTCAACTTTGGTTCTTTTCATTTTAAGGAAATTGCCTCCAAAACGTGGTATCACACAGTATCATCCCATACGTTAA
AA sequence Show only first row Show all	>Potri.008G144400.2 pacid=42808855 polypeptide=Potri.008G144400.2.p locus=Potri.008G144400 ID=Potri.008G144400.2.v4.1 annot-version=v4.1 MEEGSSGVEMAGAVIAFELKEASSWWQDINESPVWQDRIFHVLAALYGLVAAVALIQLIRIQLRVPEYGWTTQKVFHFLNFLVNGARCLLFVFRRNIESI HPSIFQHILLDSPSLAFFTTYALLVLFWAEIYYQARAISTDGLRPSFFTINAVVYAIQIAMWLVLAWKTVPIAVILSKMFFAGVSLFAALGFLLYGGRLF LMLRRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMICFNAFDKAADLDVLDHPVLNFIYYLLVEILPSTLVLFILRKLPPKRGITQYHPIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	0	1	Pt-TOM3.1
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Potri.009G100700 [exp]	7.07	0.8413	ATHM3.1,PtrTrxm5
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	9.48	0.8767
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	10.81	0.8707
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	10.95	0.8418	Pt-PMP.2
AT1G33490			unknown protein		Potri.013G095200 [exp]	13.03	0.8728
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	20.00	0.8602	SINAT4.2
AT1G67190			F-box/RNI-like superfamily pro...		Potri.009G164200 [exp]	21.21	0.7959
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.010G097900 [exp]	24.24	0.7656	Pt-TOM3.2
AT2G41610			unknown protein		Potri.014G108300 [exp]	28.80	0.8589
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.005G072500 [exp]	31.08	0.7937

Compare expression of checked genes

Potri.008G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.