Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14520 514 / 0 MIOX1 myo-inositol oxygenase 1 (.1.2) AT4G26260 469 / 3e-168 MIOX4 myo-inositol oxygenase 4 (.1.2) AT2G19800 465 / 1e-166 MIOX2 myo-inositol oxygenase 2 (.1) AT5G56640 453 / 1e-161 MIOX5 myo-inositol oxygenase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100200 [exp] 466 / 3e-167 AT2G19800 482 / 4e-173 myo-inositol oxygenase 2 (.1) Potri.018G069700 [exp] 460 / 2e-164 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012923 [exp] 463 / 1e-165 AT4G26260 489 / 2e-175 myo-inositol oxygenase 4 (.1.2) Lus10035005 [exp] 454 / 9e-162 AT4G26260 477 / 7e-171 myo-inositol oxygenase 4 (.1.2) Lus10006198 [exp] 437 / 1e-155 AT2G19800 452 / 3e-161 myo-inositol oxygenase 2 (.1) Lus10041030 [exp] 436 / 2e-147 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF05153 [poplar] [flax] MIOX Myo-inositol oxygenase
Representative CDS sequence Show only first row Show all	>Potri.008G144500.3 pacid=42806662 polypeptide=Potri.008G144500.3.p locus=Potri.008G144500 ID=Potri.008G144500.3.v4.1 annot-version=v4.1 ATGACTATCCTCTGTGAGCACCCTCCAGCTTTTGGAGTTGAGCTCGAGGAGAAAAACAATATCCCAGTTGATCATGATGGCCAGGAAAATGAATTAGTGC TGGATGAAGGATTCGTTGTGCCCGACACCAACTCTTTTGGTCACACTTTTAGGGATTATGATATAGAAAGTGAACGTCAAAAGGGAGTGGAGGAATTTTA TCGAACAAATCACATTAACCAGACTTACGGCTTTGTAAAAAGGATGAGAGAGGAGTATGGGAAATTGAATAGGGTGGAGATGAGCATATGGGAATGCTGT GAACTCCTTAACGAATTTATAGATGAGAGTGATCCTGATTTGGATGAACCTCAAATTGAACATTTACTGCAGACTGCTGAAGCCATCAGAAAAGACTATC CCGACGAGGACTGGCTGCACTTGACTGGCCTTATCCATGATCTTGGAAAGGTTCTTCTCCATCCTGCTTTCGGGGAGCTTCCTCAATGGGCTGTTGTAGG TGACACATTTCCTGTAGGATGTGCCTTCGACGAGTCGATTGTTCATCACAAGTACTTCACGGAGAATCCAGACTGCAACAATTCTGCATACAACTCTAAA TATGGAGTATATTCAGAAGGTTGCGGGCTTGACAGAGTGTTCATGTCATGGGGCCATGATGACTACATGTATCTGGTAGCCAAAGAGAACAAGACCACTC TACCATCTGCAGGTCTTTTCATTATAAGATACCACTCTTTCTATACTTTACACAGGACTGGCGCATATAGACACTTGATGAATGAAGAAGATGTTGAGAA TCTGAAATGGCTCAAAATATTCAATAAATATGACCTTTACAGTAAAAGCAAGGTGCGGATTGATGTTGAGAAAGTGAAGCCATACTATCTCTCACTCATT GAAAAGTACTTTCCTGCAAAGCTAAGGTGGTGA
AA sequence Show only first row Show all	>Potri.008G144500.3 pacid=42806662 polypeptide=Potri.008G144500.3.p locus=Potri.008G144500 ID=Potri.008G144500.3.v4.1 annot-version=v4.1 MTILCEHPPAFGVELEEKNNIPVDHDGQENELVLDEGFVVPDTNSFGHTFRDYDIESERQKGVEEFYRTNHINQTYGFVKRMREEYGKLNRVEMSIWECC ELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHPAFGELPQWAVVGDTFPVGCAFDESIVHHKYFTENPDCNNSAYNSK YGVYSEGCGLDRVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYTLHRTGAYRHLMNEEDVENLKWLKIFNKYDLYSKSKVRIDVEKVKPYYLSLI EKYFPAKLRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14520		MIOX1	myo-inositol oxygenase 1 (.1.2...		Potri.008G144500 [exp]	0	1
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	4.35	0.6187
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	25.39	0.5186
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	33.49	0.5251
AT3G51710			D-mannose binding lectin prote...		Potri.016G132500 [exp]	52.99	0.4762
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Potri.014G084800 [exp]	63.46	0.4645
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	72.59	0.4695
					Potri.006G183466 [exp]	73.17	0.4695
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	73.36	0.5163
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	92.94	0.4759	HMT1,SMTA.1
AT3G56380		ARR17	response regulator 17 (.1)		Potri.019G133600 [exp]	117.32	0.4445

Compare expression of checked genes

Potri.008G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.