Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSKR.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02220 1257 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 866 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G72300 793 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 464 / 1e-145 BRL3 BRI1-like 3 (.1) AT1G55610 462 / 8e-145 BRL1 BRI1 like (.1.2) AT5G07280 460 / 9e-144 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 427 / 2e-131 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 424 / 1e-129 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 418 / 2e-128 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G63930 411 / 3e-126 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097700 [exp] 1694 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.001G398500 [exp] 902 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 889 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 809 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 806 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G310700 [exp] 570 / 0 AT2G02220 505 / 5e-167 phytosulfokin receptor 1 (.1) Potri.017G050700 [exp] 558 / 0 AT2G02220 540 / 1e-180 phytosulfokin receptor 1 (.1) Potri.017G050600 [exp] 470 / 5e-153 AT2G02220 407 / 2e-129 phytosulfokin receptor 1 (.1) Potri.012G139000 [exp] 474 / 6e-148 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 887 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 874 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 809 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 806 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 448 / 5e-139 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 446 / 1e-137 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10020835 [exp] 442 / 7e-137 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 430 / 2e-132 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 427 / 1e-131 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006817 [exp] 416 / 4e-127 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G144700.1 pacid=42807094 polypeptide=Potri.008G144700.1.p locus=Potri.008G144700 ID=Potri.008G144700.1.v4.1 annot-version=v4.1 ATGGGGGTCCAAGATTTATGGGTTCTCTTTCTTGTTCTTGGATTCTTAATGTTTCGAGCTCAGGTCCTGCAATCACAGAACCTAACATGCAACCAGGATG ACTTGAAGGCATTGCAGGATTTCATGAGAGGCTTGCAGTTACCCATTCAAGGTTGGGGTGCTACCAATTCATCATCTCCTGATTGCTGCAACTGGTTAGG CATCACTTGCAACTCTTCCTCTTCCCTTGGTCTAGTAAATGATTCTGTCGATTCTGGTAGAGTGACAAAGTTAGAGCTCCCAAAGCGAAGACTGACTGGC GAACTTGTGGAATCAATAGGCAGCTTGGATCAGCTTAGAACCCTCAATCTCTCCCACAATTTCCTCAAAGATTCACTTCCTTTCTCGCTGTTCCATTTGC CAAAACTAGAGGTTCTAGACTTGAGTTCCAATGACTTCACTGGCTCAATCCCACAAAGTATCAATCTTCCCTCGATCATTTTCCTTGACATGTCCTCAAA TTTTCTAAATGGCTCGCTTCCTACCCATATCTGCCAAAACTCTTCTGGAATCCAGGCTCTTGTTTTGGCAGTCAACTACTTCTCTGGTATTCTTTCACCT GGATTAGGGAATTGCACTAACTTGGAGCACCTTTGTCTTGGCATGAATAACCTCACTGGTGGTATAAGTGAGGATATCTTTCAGCTTCAGAAATTGAAGC TTTTGGGTCTCCAAGATAACAAGCTTTCTGGGAATTTGAGTACTGGTATTGGTAAACTCCGTAGCCTTGAACGTTTAGACATTTCCTCCAATAGTTTTTC AGGTACAATTCCAGATGTTTTTCATAGCTTATCAAAGTTCAATTTTTTCCTAGGCCATTCTAATGATTTTGTTGGCACCATACCCCACTCCTTGGCAAAT TCTCCATCTCTCAATTTGCTTAATTTGAGGAACAATTCATTTGGAGGCATTATTGATCTGAATTGTTCTGCCTTGACTAATTTGTCATCTCTTGATTTAG CTACTAATAATTTTAGTGGGCCCGTGCCTGATAATCTTCCTTCTTGTAAGAATTTGAAGAATATTAATCTTGCCCGGAACAAGTTTACTGGACAAATCCC AGAAAGCTTCCAGCATTTTGAAGGCCTCTCCTTCCTTTCCTTCTCAAATTGCAGCATTGCCAATCTTTCATCTGCCCTTCAAATCCTTCAGCAATGCAAG AATTTAACGACCTTGGTCCTCACCTTGAACTTCCATGGTGAAGAATTGCCCGATAATCCTGTGCTTCACTTTGAGAACTTGAAGGTTCTTGTTATGGCTA ATTGTAAACTCACAGGGTCAATACCCCAATGGTTGATCGGCAGCTCCAAATTGCAGTTGGTGGATTTGTCATGGAACCGCTTAACTGGGTCTATTCCTTC CTGGTTTGGTGGTTTTGTAAATCTCTTTTACTTGGACTTATCAAACAATTCATTCACTGGCGAGATTCCAAAGAACTTGACTGAATTGCCAAGCCTCATC AACAGGAGTATCTCAATCGAGGAGCCTTCACCGGATTTCCCATTTTTCCTGACAAGGAATGAAAGTGGGAGGGGGTTGCAGTATAATCAGGTCTGGAGCT TTCCATCTACTTTGGCGCTCAGTGACAACTTCCTCACTGGACAAATTTGGCCAGAATTCGGTAATTTGAAAAAACTCCATATTTTTGCGTTGAGTTCTAA CAATTTATCCGGACCTATACCAAGTGAGTTATCAGGGATGACCAGCTTGGAGACTTTGGATTTGTCCCATAACAATCTTTCTGGGACCATACCCTGGTCC TTGGTAAATCTCAGTTTTCTGTCGAAGTTCAGTGTTGCATACAATCAGCTCCATGGGAAGATCCCTACTGGAAGTCAGTTTATGACCTTCCCAAACTCAA GCTTTGAAGGGAATCATCTTTGTGGCGACCATGGTACTCCTCCTTGCCCAAGATCCGATCAGGTTCCACCTGAAGCATCCGGAAAATCAGGAAGAAACAA AGTTGCTATCACTGGAATGGCTGTTGGGATTGTTTTTGGTACAGCTTTCCTTCTTACCCTCATGATCATGATTGTGCTGCGAGCACATAACCGAGGCGAG GTTGATCCTGAAAAGGTGGATGCTGACACAAATGACAAAGAATTAGAAGAATTCGGATCAAGGTTAGTGGTTCTGCTTCAAAATAAGGAGAGCTATAAAG ATCTCTCCTTGGAGGACCTTTTGAAGTTCACCAACAATTTTGACCAGGCGAATATCATTGGCTGTGGGGGTTTTGGTCTAGTTTACAGAGCTACCCTCCC TGATGGTAGGAAGCTTGCGATTAAACGTCTCTCTGGTGACTCTGGTCAAATGGACAGGGAATTCCGTGCTGAAGTTGAAGCCCTGTCAAGAGCTCAGCAT CCAAATCTTGTGCATCTCCAAGGCTTTTGCATGTTAAAAAATGACAAACTCTTAATATACTCTTACATGGAAAACAGCAGTTTGGATTATTGGTTGCATG AAAAACTCGACGGGCCATCCTCACTTGATTGGGATACAAGGCTCCAAATTGCTCAAGGGGCTGCAAGGGGGCTTGCATATTTGCATCAAGCATGCGAGCC ACATATCGTTCACCGGGATATAAAGTCCAGTAACATCCTTTTAGACGAGAATTTTGTAGCTCATTTAGCTGATTTTGGTCTTGCTAGGCTCATATTACCT TATGATACCCATGTCACAACTGATCTTGTGGGGACATTAGGCTACATTCCTCCTGAATATGGCCAGGCTGCAGTGGCTACTTACATGGGGGATGTGTATA GTTTTGGGGTTGTTCTTTTGGAGCTTCTTACCGGGAAAAGGCCCATGGATATGTGCAAACCAAAAGGATCACGGGATTTGATCTCTTGGGTGATTCAGAT GAAGAAGGAAAATAGAGAAAGCGAGGTATTTGATCCATTCATTTATGACAAGCAGAATGATAAGGAGTTACAACGAGTTCTCGAGATTGCACGCCTTTGC TTGAGCGAATACCCAAAGCTAAGGCCTTCAACAGAGCAGTTAGTTTCTTGGCTTGACAACATCGACACCAACACCTAG
AA sequence Show only first row Show all	>Potri.008G144700.1 pacid=42807094 polypeptide=Potri.008G144700.1.p locus=Potri.008G144700 ID=Potri.008G144700.1.v4.1 annot-version=v4.1 MGVQDLWVLFLVLGFLMFRAQVLQSQNLTCNQDDLKALQDFMRGLQLPIQGWGATNSSSPDCCNWLGITCNSSSSLGLVNDSVDSGRVTKLELPKRRLTG ELVESIGSLDQLRTLNLSHNFLKDSLPFSLFHLPKLEVLDLSSNDFTGSIPQSINLPSIIFLDMSSNFLNGSLPTHICQNSSGIQALVLAVNYFSGILSP GLGNCTNLEHLCLGMNNLTGGISEDIFQLQKLKLLGLQDNKLSGNLSTGIGKLRSLERLDISSNSFSGTIPDVFHSLSKFNFFLGHSNDFVGTIPHSLAN SPSLNLLNLRNNSFGGIIDLNCSALTNLSSLDLATNNFSGPVPDNLPSCKNLKNINLARNKFTGQIPESFQHFEGLSFLSFSNCSIANLSSALQILQQCK NLTTLVLTLNFHGEELPDNPVLHFENLKVLVMANCKLTGSIPQWLIGSSKLQLVDLSWNRLTGSIPSWFGGFVNLFYLDLSNNSFTGEIPKNLTELPSLI NRSISIEEPSPDFPFFLTRNESGRGLQYNQVWSFPSTLALSDNFLTGQIWPEFGNLKKLHIFALSSNNLSGPIPSELSGMTSLETLDLSHNNLSGTIPWS LVNLSFLSKFSVAYNQLHGKIPTGSQFMTFPNSSFEGNHLCGDHGTPPCPRSDQVPPEASGKSGRNKVAITGMAVGIVFGTAFLLTLMIMIVLRAHNRGE VDPEKVDADTNDKELEEFGSRLVVLLQNKESYKDLSLEDLLKFTNNFDQANIIGCGGFGLVYRATLPDGRKLAIKRLSGDSGQMDREFRAEVEALSRAQH PNLVHLQGFCMLKNDKLLIYSYMENSSLDYWLHEKLDGPSSLDWDTRLQIAQGAARGLAYLHQACEPHIVHRDIKSSNILLDENFVAHLADFGLARLILP YDTHVTTDLVGTLGYIPPEYGQAAVATYMGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIQMKKENRESEVFDPFIYDKQNDKELQRVLEIARLC LSEYPKLRPSTEQLVSWLDNIDTNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.008G144700 [exp]	0	1	Pt-PSKR.2
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	6.92	0.8245
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.006G090000 [exp]	10.29	0.8786
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.007G121200 [exp]	12.24	0.8745	COL13.2
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.010G024500 [exp]	22.44	0.8667
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.008G048300 [exp]	24.08	0.8692
AT1G02460			Pectin lyase-like superfamily ...		Potri.014G115700 [exp]	26.70	0.8411
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	29.94	0.8719
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	31.22	0.8531
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.019G127300 [exp]	32.74	0.8627
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.009G070800 [exp]	33.43	0.8128	LRP1.2

Compare expression of checked genes

Potri.008G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.