Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 707 / 0 glutaredoxin-related (.1) AT4G08550 256 / 6e-76 electron carriers;protein disulfide oxidoreductases (.1) AT2G23700 105 / 3e-23 Protein of unknown function, DUF547 (.1) AT5G66600 104 / 4e-23 Protein of unknown function, DUF547 (.1.2.3.4) AT3G13000 93 / 1e-19 Protein of unknown function, DUF547 (.1.2) AT1G16750 93 / 1e-19 Protein of unknown function, DUF547 (.1) AT3G18900 92 / 2e-19 unknown protein AT1G43020 88 / 3e-18 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 85 / 4e-17 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 81 / 9e-16 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097600 [exp] 1081 / 0 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 434 / 6e-143 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.005G130000 [exp] 100 / 1e-21 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 99 / 2e-21 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 96 / 3e-20 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 95 / 3e-20 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 90 / 2e-18 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 88 / 6e-18 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 84 / 1e-16 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029074 [exp] 827 / 0 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10034196 [exp] 826 / 0 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10012909 [exp] 794 / 0 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10030563 [exp] 741 / 0 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10016786 [exp] 96 / 2e-20 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 95 / 5e-20 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 92 / 5e-19 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10040507 [exp] 82 / 2e-16 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10021756 [exp] 82 / 8e-16 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10037293 [exp] 81 / 9e-16 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin CL0123 [poplar] [flax] HTH PF00610 [poplar] [flax] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [poplar] [flax] PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Potri.008G144800.1 pacid=42806654 polypeptide=Potri.008G144800.1.p locus=Potri.008G144800 ID=Potri.008G144800.1.v4.1 annot-version=v4.1 ATGGAGGTGATAAACGGAGAACTCCTCAAGCCTGCTGGCGAAGAGAAATTAGGAATCAAGGTAACAGAGTCAAACGGGGTTGTGGATAAAGAGATTATTA AAACAAGATACGAAAACGAGAATCTCTCCAGTTCCGTCCATTTCTCTCCAAGTTCGAATTCAAATGTTAACCAGGATGATCCAGCTGGAGATACCACCAA GCCAGAAGATATTATAGCCGTTACACCCAAAATCAACGGCTATAAGCAAACAATCCAGCCTGATTTTCATCTCCCAAAGCCAGAGGCGCCTCCAGGTCTC TCACCTTCACCTCCATCTCAACCATACGAAAACGGCAACGCTGTAGTCCGATCCAAATCCTTGTCTGAGAGTTTCACGGCGGTCGACATGCCGTCTATCG GAAAATTCATCAAGGACCGAAGCAACAGCTTATCGGAAACGATTTCGAAAAGATTTTCCTCTCTGAAATTCGACGACGGTGATGACGATTACATGAATAA TAAGGTGAAATCATTCGACTCAGGCGTGACAGAGTTCAAAATATCGGGACTCAAAGTTGTAGTGATGCTCAAGAACAACGAAAAAGAGGAACAAATTAAA GGACGGGTTAGTTTCTTTTCAAGGTCAAATTGCAGAGATTGCACTGCAGTCCGCTCGTTTTTCAGAGAGAGAGGATTAAAATTTGTTGAAATCAACATCG ACGTATATCGGCAGAGGGAGAAAGAATTGATTGAGAGAACCGGAAGTTCTCAAGTACCGCAGATATTCTTCAACGACAAATTATTTGGCGGTCTGGTAGC GTTGAATTCGTTGAGGAACAGTGGAGGTTTTGAGGAGAGGTTGAAGGAGATGCTAGGGAAGAAATGTTCAGGTGATGCGCCTGCACCGCCAGTGTATGGA TTTGATGATCATGAGGAGGAATCAACGGACGAGATGGTTGGGATTGTGAAGGTTTTGAGGCAGAGATTGCCAATTCAGGACCGTCTGATGAAGATGAAGA TAGTTAAGAATTGTTTTGCTGGGAAAGAGATGGTCGAGGTGCTCATTCACCACTTCGATTGCGGCAGGAAGAAGGCTGTTGAGATTGGTAAGCAGCTGGC CAGGAAGCACTTCATTCATCATGTTTTCGGGGAAAATGATTTTGAAGATGGAAACCATTATTATCGTTTCCTTGAGCATGAACCATTTATTCCAAAATGC TACAATTTCAGAGGGTCTACGAATGACAGTGAGCCTAAGCCCGCAGTTGTGGTTGGACAAAGACTCAACAAGATAATGTCTGCGATACTAGAGTCATACG CTTCAGATGATAGGCGCCATGTTGATTATGCTGGCATCAGCAAAAGCGAGGAATTCAGAAGATATGTCAATTTGGTTCAAGATCTTCACAGGGTGGATCT CTTAAAGCTCTCACAAGATGAGAAACTGGCATTCTTCTTGAACTTGCACAATGCTATGGTCATCCATGCTATAATTAGAGTAGGATGTCCTGAAGGGGCA ATCGAAAGGAGATCCTTCTCTTCCAACTTTCAATACATTGTAGGAGGGTCTTCCTACTCTCTAAATACAATTACAAATGGAATCCTCAGAAGCAATAGAA GATCTCCCTATTCATTAGTCAAGCCATTTGGCACTGGAGACAAACGCTTAGAGGTTGCTCTTCCTAAAGTGAATCCATTAATTCATTTTGGACTCTGCAT TGGTACAACATCAAGCCCCCCAGTGAGGTTTTTCACATCCCAAGGAATCGAAGCTGAATTAAGATGTGCTGCAAGAGAATTCTTCCAAAGGAGTGGAATG GAGGTGGACTTGGAAAAGAGGACAGTTTACCTTACACGGATCATCAAGTGGTTCAGTGGTGATTTTGGCCAAGAGAAAGAAATCCTGAGGTGCATTATCA ACTACTTGGATGCAACTAAAGCAGGTCTGCTAACACATCTTCTGGGAGATGGAGGCCCTGTTAACATTGTGTACCAAGATTATGATTGGTCCATCAATTC CTAA
AA sequence Show only first row Show all	>Potri.008G144800.1 pacid=42806654 polypeptide=Potri.008G144800.1.p locus=Potri.008G144800 ID=Potri.008G144800.1.v4.1 annot-version=v4.1 MEVINGELLKPAGEEKLGIKVTESNGVVDKEIIKTRYENENLSSSVHFSPSSNSNVNQDDPAGDTTKPEDIIAVTPKINGYKQTIQPDFHLPKPEAPPGL SPSPPSQPYENGNAVVRSKSLSESFTAVDMPSIGKFIKDRSNSLSETISKRFSSLKFDDGDDDYMNNKVKSFDSGVTEFKISGLKVVVMLKNNEKEEQIK GRVSFFSRSNCRDCTAVRSFFRERGLKFVEINIDVYRQREKELIERTGSSQVPQIFFNDKLFGGLVALNSLRNSGGFEERLKEMLGKKCSGDAPAPPVYG FDDHEEESTDEMVGIVKVLRQRLPIQDRLMKMKIVKNCFAGKEMVEVLIHHFDCGRKKAVEIGKQLARKHFIHHVFGENDFEDGNHYYRFLEHEPFIPKC YNFRGSTNDSEPKPAVVVGQRLNKIMSAILESYASDDRRHVDYAGISKSEEFRRYVNLVQDLHRVDLLKLSQDEKLAFFLNLHNAMVIHAIIRVGCPEGA IERRSFSSNFQYIVGGSSYSLNTITNGILRSNRRSPYSLVKPFGTGDKRLEVALPKVNPLIHFGLCIGTTSSPPVRFFTSQGIEAELRCAAREFFQRSGM EVDLEKRTVYLTRIIKWFSGDFGQEKEILRCIINYLDATKAGLLTHLLGDGGPVNIVYQDYDWSINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	0	1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	2.82	0.6324	CDPK1.3
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	3.16	0.6394
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	5.74	0.6333
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	8.66	0.5651
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.019G079300 [exp]	11.61	0.6070
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.004G072000 [exp]	14.49	0.5575
AT4G02110			transcription coactivators (.1...		Potri.002G197400 [exp]	15.55	0.6819
AT3G51940			unknown protein		Potri.001G021100 [exp]	17.32	0.6068
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	17.54	0.5789
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	20.49	0.5985

Compare expression of checked genes

Potri.008G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.