Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60670 251 / 9e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 245 / 8e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT3G07565 192 / 6e-60 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G68160 169 / 2e-50 Protein of unknown function (DUF3755) (.1) AT2G43470 77 / 2e-16 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097000 [exp] 498 / 3e-179 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.014G197300 [exp] 179 / 7e-55 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.017G023300 [exp] 170 / 2e-51 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 163 / 7e-49 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013072 [exp] 361 / 1e-125 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 350 / 5e-121 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 337 / 2e-116 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 330 / 1e-112 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10027045 [exp] 130 / 4e-34 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10025582 [exp] 84 / 2e-19 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 83 / 6e-18 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 51 / 1e-07 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12579 [poplar] [flax] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Potri.008G145100.5 pacid=42808507 polypeptide=Potri.008G145100.5.p locus=Potri.008G145100 ID=Potri.008G145100.5.v4.1 annot-version=v4.1 ATGGCTGCAGAGTCTAACACAGGGTTTCACCTAGAGGGGACCTTAGGTTCTGCACTTAATCGGCACGCAATTTCTTTTCAATCTGGCGCTATAAACAGTG GCTGCACAACGGATATGATTCCCATGGGGATGGGGTCTTACTTTGGGATTAATACTAGTACTACTAGTAGTAGCTTGATGTTGCCTGGGAGTTCCAGCTT GATTAGTAATAATACCAGTCCTGGTGGTAGTGGAAGTGGTGGAATTGTTCAAACTCAAGCTGGGAATTCTTCTGCCTCTTCTTCGTTGCTTCTTGATTCC GTTCCTGGCTTAAAGCATGATGCTGGTTTGGCTGTTGAGTGGTCCGTCGAGGAGCAGTACAAACTGGAGGAAGGCCTTCAAAAATATGCTGATGAACCAA GTATTCTGAGATACGTAAAGATTGCAGCCATGCTCCGTGATAAAACTGTTCGTGATGTTGCGTTGAGGTGTAGATGGATGACGAGAAAGCGAAGGAAGGC AGAAGATTATAACATGGGAAAGAAGATCAACAGCAGGAAGGATAAGCTGGTGGAATCATCCTTGAAGATGAACATGGCTGCAGGTTTACTGCAGAACGTG GCTTCATATCCTCTAATGATGCACCATACAGACCAAAGTGAACCTATGCCTTTTGAAGGAATTAGTGGGACGACTAGACTCTTGGACCAGAATGCTCAAG CTTTTAGTCAGATATCAGCTAACCTTTCTACATTCAAGTTGCAGGATAACATTGACTTCTTTTGTTACACAAGGAACAATATCACTGCCATCCTGAATGA TATGAGAGAGATGCCTGGAATAATGAGTCGGATGCCACCACTGCCTGTGTCCATTGATGAGGATCTTGCAAATAGTATATTGCCCAATACAATTCAGTCA ATGATGTTCGGCTCGCCTTCTGGAATACAACTGAAGCAGGAGCCAAGGTGCTGA
AA sequence Show only first row Show all	>Potri.008G145100.5 pacid=42808507 polypeptide=Potri.008G145100.5.p locus=Potri.008G145100 ID=Potri.008G145100.5.v4.1 annot-version=v4.1 MAAESNTGFHLEGTLGSALNRHAISFQSGAINSGCTTDMIPMGMGSYFGINTSTTSSSLMLPGSSSLISNNTSPGGSGSGGIVQTQAGNSSASSSLLLDS VPGLKHDAGLAVEWSVEEQYKLEEGLQKYADEPSILRYVKIAAMLRDKTVRDVALRCRWMTRKRRKAEDYNMGKKINSRKDKLVESSLKMNMAAGLLQNV ASYPLMMHHTDQSEPMPFEGISGTTRLLDQNAQAFSQISANLSTFKLQDNIDFFCYTRNNITAILNDMREMPGIMSRMPPLPVSIDEDLANSILPNTIQS MMFGSPSGIQLKQEPRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60670			Protein of unknown function (D...		Potri.008G145100 [exp]	0	1
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	1.41	0.8497
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	3.46	0.7931
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	6.32	0.8158
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	6.48	0.8256
AT5G66900			Disease resistance protein (CC...		Potri.007G039300 [exp]	7.74	0.7978
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	8.83	0.8418
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	10.39	0.8141
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	10.77	0.8182	Pt-SPL1.4
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	21.33	0.8042
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	24.00	0.8032

Compare expression of checked genes

Potri.008G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.