Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68660 62 / 1e-12 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096600 [exp] 248 / 6e-86 AT1G68660 60 / 1e-11 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.008G117800 [exp] 57 / 7e-11 AT1G68660 271 / 1e-94 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G128500 [exp] 52 / 3e-09 AT1G68660 256 / 1e-88 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035041 [exp] 55 / 4e-10 AT1G68660 247 / 2e-85 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10034292 [exp] 54 / 1e-09 AT1G68660 234 / 3e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10041479 [exp] 53 / 2e-09 AT1G68660 235 / 1e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02617 [poplar] [flax] ClpS ATP-dependent Clp protease adaptor protein ClpS
Representative CDS sequence Show only first row Show all	>Potri.008G145500.5 pacid=42805885 polypeptide=Potri.008G145500.5.p locus=Potri.008G145500 ID=Potri.008G145500.5.v4.1 annot-version=v4.1 ATGTCTACGGGTCTCACTGTCAAGGCTTCCTTTACCAAGGGAGGTCCTGGCGTCTTGGAACGCCCCACTTTTGATCAATCCCAGTTCGACCCTTCTTCTC AAGTTCTCGAAGGAGGGGATATCGGACGACTAAGGGATAAGAGAGGTGTTGGGAGTGGAGATAGTTATAGAGTCTTGCTAATTGATGATAGCCGCCATTC TGAAAGCTTAGTTGCAAAGGTATTACCTCGAGCTGTGCCATCAGTCACACCTGAGGATGCTAGAAAACTATTTCACGAGTCACGCGAAAATGGTGTAGCG GTCGTTATCGTCACAGTTAAGGAACATGCTGAGTTTTATTCCCAGATGATGATACGTGGTGGATTACGATCAGTGATTGAGCCAGATTCGAGTAATGTGT AA
AA sequence Show only first row Show all	>Potri.008G145500.5 pacid=42805885 polypeptide=Potri.008G145500.5.p locus=Potri.008G145500 ID=Potri.008G145500.5.v4.1 annot-version=v4.1 MSTGLTVKASFTKGGPGVLERPTFDQSQFDPSSQVLEGGDIGRLRDKRGVGSGDSYRVLLIDDSRHSESLVAKVLPRAVPSVTPEDARKLFHESRENGVA VVIVTVKEHAEFYSQMMIRGGLRSVIEPDSSNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.008G145500 [exp]	0	1
					Potri.005G063600 [exp]	3.46	0.9726
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.002G006100 [exp]	7.48	0.9681
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124156 [exp]	8.36	0.9723
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	10.77	0.9725	Pt-RPS9.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124128 [exp]	13.41	0.9699
AT4G22830			unknown protein		Potri.001G114800 [exp]	14.96	0.9704
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	15.09	0.9721
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	16.09	0.9705
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.002G196100 [exp]	18.97	0.9696
AT1G14345			NAD(P)-linked oxidoreductase s...		Potri.010G093300 [exp]	19.41	0.9682

Compare expression of checked genes

Potri.008G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.