Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	THRRS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 1100 / 0 Threonyl-tRNA synthetase (.1) AT2G04842 417 / 5e-137 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G17960 394 / 2e-130 Threonyl-tRNA synthetase (.1) AT1G18130 208 / 3e-63 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096500 [exp] 958 / 0 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 411 / 4e-134 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.010G096550 [exp] 291 / 4e-94 AT1G17960 219 / 2e-69 Threonyl-tRNA synthetase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005351 [exp] 1193 / 0 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 1188 / 0 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 1072 / 0 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 1011 / 0 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 408 / 7e-133 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 264 / 7e-83 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 169 / 3e-49 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10030642 [exp] 86 / 4e-20 AT1G17960 79 / 9e-19 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 77 / 1e-16 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030584 [exp] 48 / 3e-05 AT3G54630 471 / 7e-161 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain CL0094 [poplar] [flax] Peptidase_ME PF07973 [poplar] [flax] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Potri.008G145600.1 pacid=42805770 polypeptide=Potri.008G145600.1.p locus=Potri.008G145600 ID=Potri.008G145600.1.v4.1 annot-version=v4.1 ATGTGCATATGTTCTCGGCTGCTCTCACCTCTCCGCCGTTTCTCATCCTCCTCTCCTCTCCTTCTTTCTATACCTCCTCGCCGTCTCCTCTCCTTCTCCT CTTCCACGACAATGGCTGTCTCCAAGTCTCACGCAAGAGATGAAGAATATCTCAATATAGCAATCCCTAAACGCATCCAGCTCTTCCAATCCATTCAATC TGAACAACTCTCCCGCCTCCAATCCCTCCCTCACGACTCCATCAAGATTACTTTGCCTGACGGGACAGTGAAGGAAGGAAAAAGATGGGAATCGTCTCCT ATGGATATCGCAAAGGAGATTGGGAAGAGTGTGGCTGGGAACGCGTTGATCTCTCAAGTCAACGGAGTGTTGTGGGACATGAATAGGCCTTTAGAGGATG ATTGTGAGCTCAAGATTTTTAATTTTGAAAGTGACGAAGGACGCGACACCTTTTGGCATTCCAGTGCTCACATTCTTGGCCAGGCTCTTGAGATGGAGTA TGGTTGTAAGCTTTGCATTGGGCCCTGTACCACTAGAGGAGAGGGATTCTATTATGATGCATTCTATGGTGAATTGGGATTGAATGATGATCACTTCAAG AAGATTGATGCAGCTGCGTTGAAAGCTGTTGCGGAGAAACAACCTTTTGAGCGCATTGAAGTATCGCGGGAACAGGCACTTGAGATGTTTTCAGACAATA ATTTTAAGGTTGAAATAATCAAAGATCTGCCCGCAGACAAAACTATAACTGTATACAGATGTGGCCCGTTGGTAGATTTGTGTCGTGGGCCTCATATACC TAATACTTCCTTTGTGAAAGCTCTTGCATGTTTGAAGGCTTCATCGGCTTATTGGAGAGGCAATAGAGATCGTGAAAGTTTACAAAGAGTGTATGGAATT TCTTATCCGGATAAAAAACGTTTGCAGGAGTATAAGCAGTTCTTGGAAGAAGCAAAGAAGTATGATCACAGGTTGCTGGGTATTAAGCAGGAGTTATTCT TTTGTCATCCACTGAGTCCAGGAAGTTGGTTTTTCCTTCCACATGGAACTCGGGTTTACAACAAACTAATGCAATTTATAAAAGATGAGTACAGAAAAAG AGGTTACGAAGAGGTTAAGTCTCCAAATATTTTTAACATGAAACTTTGGGAGACATCTGGTCATGCTGCCAATTACAAGGAGAATATGTTTCTGCTTGAG ATTGAAAATCAAGAATTTGGACTGAAACCAATGAATTGCCCTGGGCACTGTTTGATGTTTCAACATAGAGTTCGTTCATATAGAGAACTTCCTCTTCGAT TGGCTGATTTTGGGGCCTTGCATCGCAATGAAGCAAGTGGTGCACTCACTGGACTAACACGTGTTCGAAGATTTCAGCAGGATGATGCTCACATATTCTG CAGGAAATCCCAGATAAAAGATGAAGTCAGAGGTGTCTTAGAATTCATCGACTATACTTATGGAAAATTTGGATTCACTTATGAGCTGAAGCTATCTACG AGGCCAGAGAAATACCTAGGAGTCTTGGAAACATGGGATGAAGCTGAGAAAGCTCTTACAGAAGCACTGGATGAGTTTGGGAAGCCATGGAAGATTGATG AAGGCGATGGTGCATTTTATGGACCGAAGATAGATATCAGTGTATCCGATGCATTAAAGAGGAAATTTCAGTGTGCCACATTGCAGCTTGACTTCCAGCT TCCAGATCGTTTTAAGTTGGAATATTCAGCTGAGGATGAAGCCAGAAGTGAAGCACCTGTTATGATACATAGAGCGATCCTAGGTTCTGTTGAGCGCATG TTTGCTATACTATTGGAGCATTACAAAGGCAAGTGGCCCTTCTGGCTTAGTCCCCGTCAAGCGATTGTCTGCCCTGTGTCTGAGAAATCCCAGTCTTATG CATTACAGGTGCGGGATCAGATTCATGAAGCTGGCTATTATGTTGATGTGGATGCAACCGACAGAAAGATCCAGAAAAAGGTACGAGAAGCTCAGTTGGC ACAGTACAATTATATACTGGTTGTTGGTGAAGAGGAATCCAAAACTGGACAGGTGAGTGTGCGGGTGAGAGATAACGCTGACCATTCAGTGATGAGTATT GAGAGCCTACTCGGACTCTTCAAGGAATTAGTTGCAGATTTCCGCTAG
AA sequence Show only first row Show all	>Potri.008G145600.1 pacid=42805770 polypeptide=Potri.008G145600.1.p locus=Potri.008G145600 ID=Potri.008G145600.1.v4.1 annot-version=v4.1 MCICSRLLSPLRRFSSSSPLLLSIPPRRLLSFSSSTTMAVSKSHARDEEYLNIAIPKRIQLFQSIQSEQLSRLQSLPHDSIKITLPDGTVKEGKRWESSP MDIAKEIGKSVAGNALISQVNGVLWDMNRPLEDDCELKIFNFESDEGRDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEGFYYDAFYGELGLNDDHFK KIDAAALKAVAEKQPFERIEVSREQALEMFSDNNFKVEIIKDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGNRDRESLQRVYGI SYPDKKRLQEYKQFLEEAKKYDHRLLGIKQELFFCHPLSPGSWFFLPHGTRVYNKLMQFIKDEYRKRGYEEVKSPNIFNMKLWETSGHAANYKENMFLLE IENQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGALHRNEASGALTGLTRVRRFQQDDAHIFCRKSQIKDEVRGVLEFIDYTYGKFGFTYELKLST RPEKYLGVLETWDEAEKALTEALDEFGKPWKIDEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFKLEYSAEDEARSEAPVMIHRAILGSVERM FAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHEAGYYVDVDATDRKIQKKVREAQLAQYNYILVVGEEESKTGQVSVRVRDNADHSVMSI ESLLGLFKELVADFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.008G145600 [exp]	0	1	THRRS.1
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	2.82	0.7850
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	6.85	0.7889
AT2G27775			unknown protein		Potri.009G148400 [exp]	10.67	0.7607
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	12.00	0.7571	Pt-SYNC3.1
AT1G43690			ubiquitin interaction motif-co...		Potri.002G069100 [exp]	14.83	0.6668
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	16.24	0.7376
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	17.94	0.7395	Pt-PURE.2
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	19.74	0.6926
AT4G39380			unknown protein		Potri.007G077700 [exp]	20.34	0.7027
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	22.13	0.7346	Pt-LOS1.2

Compare expression of checked genes

Potri.008G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.