Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60010 190 / 2e-61 unknown protein AT1G10530 163 / 7e-51 unknown protein AT5G50090 132 / 5e-39 unknown protein AT5G62900 126 / 1e-36 unknown protein AT5G67620 101 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095400 [exp] 320 / 9e-113 AT1G60010 187 / 5e-61 unknown protein Potri.012G077300 [exp] 164 / 2e-51 AT5G50090 168 / 1e-53 unknown protein Potri.015G072501 [exp] 162 / 3e-50 AT5G50090 152 / 4e-47 unknown protein Potri.007G005600 [exp] 112 / 9e-31 AT5G67620 184 / 7e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029193 [exp] 199 / 7e-65 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 194 / 6e-63 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 186 / 1e-59 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 154 / 5e-48 AT1G60010 150 / 2e-47 unknown protein Lus10043461 [exp] 129 / 2e-37 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 128 / 7e-37 AT5G50090 147 / 3e-45 unknown protein Lus10004229 [exp] 126 / 2e-36 AT5G50090 150 / 1e-46 unknown protein Lus10042139 [exp] 126 / 4e-36 AT5G50090 141 / 4e-43 unknown protein Lus10019264 [exp] 95 / 8e-24 AT5G67620 163 / 5e-51 unknown protein Lus10026474 [exp] 46 / 1e-06 ND 47 / 1e-07
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.008G146500.4 pacid=42807582 polypeptide=Potri.008G146500.4.p locus=Potri.008G146500 ID=Potri.008G146500.4.v4.1 annot-version=v4.1 ATGATATTGCATAGTGGTGATGGGAGCTGTGTAGAAAGAGACTTGTGCTTACCTCGCCTCGCCTCCTTCCTTATCTTTCTCCATCCTTTTCTTTCTTCCA TTCACTCCCAACTAGAGGGATTGATAGAGAATAGAGAGATGGGGAATTGTCAAGCCATAGATGCTGCAGCGCTGGTTATACAGCATCCAAGTGGGAAGAT AGAGAGGTTATATTGGCCAGTTAGCGTTAGCGAGGTGATGAGAATGAACCCTGGTCATTATGTTTCTTTGATCATTCCATTGCCTGTATCTGGGGATCAA GAAAACCAAGAACACATCAAAACTGTGCAGTTCACCCGTGTTAAGCTTCTCAGGCCAAGCGATTCTCTTACACTTGGTCATGCTTATCGCCTTGTTACCA CTCAAGAAGTTATGAAGGTGATACGGGCCAAGAAGTACGCAAAACTGAAGAGACAGCAGCAGCCAGAATCGGTTGACGAGAATAAGTCACAGCTGCAGGT AGCACCAGAGAAGAAGCGAAGCACAGATTGTGAGGCAGAAAAGAAGCCTAACACAGAGAAGGATTGCAAGGAACCCAAACATAGAAGACATGGACACAGG ACGCCATCAATCAACTCTGCTTCACTAAGGTCAAAGTCATGGCGCCCCTCCTTACAGAGTATCTCTGAGGCTGCTAGCTGA
AA sequence Show only first row Show all	>Potri.008G146500.4 pacid=42807582 polypeptide=Potri.008G146500.4.p locus=Potri.008G146500 ID=Potri.008G146500.4.v4.1 annot-version=v4.1 MILHSGDGSCVERDLCLPRLASFLIFLHPFLSSIHSQLEGLIENREMGNCQAIDAAALVIQHPSGKIERLYWPVSVSEVMRMNPGHYVSLIIPLPVSGDQ ENQEHIKTVQFTRVKLLRPSDSLTLGHAYRLVTTQEVMKVIRAKKYAKLKRQQQPESVDENKSQLQVAPEKKRSTDCEAEKKPNTEKDCKEPKHRRHGHR TPSINSASLRSKSWRPSLQSISEAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60010			unknown protein		Potri.008G146500 [exp]	0	1
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	3.74	0.9014
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.005G147900 [exp]	4.47	0.8845
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	5.83	0.8989
AT4G16447			unknown protein		Potri.016G009200 [exp]	6.92	0.8752
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	8.66	0.8815
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	10.24	0.8321	Pt-TCP1.1
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	12.40	0.8492
AT1G52140			unknown protein		Potri.018G046500 [exp]	13.26	0.8668
AT2G20830			transferases;folic acid bindin...		Potri.019G104700 [exp]	16.24	0.8076
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	17.66	0.8945

Compare expression of checked genes

Potri.008G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.