Plant FIBer expression Database

Potri.008G146700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70200 201 / 5e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029195
[exp]
224 / 8e-69 AT1G70200 210 / 2e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Lus10010710
[exp]
211 / 4e-64 AT1G70200 204 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Potri.008G146700.1 pacid=42808742 polypeptide=Potri.008G146700.1.p locus=Potri.008G146700 ID=Potri.008G146700.1.v4.1 annot-version=v4.1
ATGTCGAGGATGGTGATGGGCTTGGGCAACCCAGTGTCTTCCATCCATTCTTCTTACTGTGTTTTAATCCCAAGAAATCCGAACAAAGCTCTTCACACCC
AACATCCAGTCTTCAAAATCAATCACGCCCATCTTTCTCATTTCCACTATAAAACTTCTGCTACTAGTTTTACGTCTTGTCGTCTACATGCTCGACGAAA
GGAAAGCATTGCTCCTCCAGCTGTCGTGAGCGATCTCGATGATGAATATGATGGTTTTGACGATGATGAGCTTGATTATGACGATAAAGATGAAGATGAA
GAAGAGTTTATGCCATTTGGGAAGATGAAGAAGTGGCTTGAGACAAGACCACGTGGGTTTGGCGGGAGCAAAGTTTATGATACTCGTGTTGAAGACAAGC
TGCTTGAAGAAATTGAGCAGAGCAGACTTGCTCAGGCTGCTAATATTAATAACCTCAAATATCCTAATCCTGCTGCACCCAACAAGACTCACCATCAAGC
TAAGAATGCACCCGATGTTATTCCAACTGGCATTCGTGTGCATGTCATCAACCTTCCGAAGAAGAAGAACATCCACAGAGATTTGAAAACAGCTTTTAAG
GATGTTCAAGGTATTATTAATATAATCCCAGCTGTTTCTGGAAACAAGAAGACAAAAGATCCTATTTGCAAGGGCTTTGCTTTTGTTGATTTCAAGTCGG
AGGAGGATGCTGCTAGGTTTGTGCAACAATTTTCTAAGCAAAGTATAGCATTTGGCAAGATTCAGAAGCAGATAAAATGTGAGATGAAAAAATCAAGCTC
TTTATCGTCTTCTGATGATGAGTCAGCTGGCAGCTTCGCCTCTGACATATCTAAATCTGATGGCATGGATGATTCTTTTGATGATCCCCTATTGATGAAT
TCTGTCACAGAAGGAGAGAGAAATGCTGATTTCAAAATGGATGATTCTTTCCTTGAAGAAACAGTCTCTGACATATTTGAATCTGATGACCTGGATGAGG
AGCTAGAAGATATAACAGAGAACGTGGAATCTGTAAGCAAATCAGACTTGAGCAGTTATGATAGTTCAGAACCAAGGATGGAAGCAGCTACTGATTCACT
TTCCCCAAAGAAACAACATAAAAAACGGGCTTCTAAGAAAAAGATAATAGCAAAGGGAGGGGCAAAGAAGGTTCCGAAGTTGGCCATCCCAGGGTCTGCA
AAGAGGTTGAGGATAAAGGAGAAGGCAGTGCTAACAGATGTGTTCACTAAATATGGATTGAAAACTACTGCGGCTTCAGCGAAAGAGAGTTGA
AA sequence
>Potri.008G146700.1 pacid=42808742 polypeptide=Potri.008G146700.1.p locus=Potri.008G146700 ID=Potri.008G146700.1.v4.1 annot-version=v4.1
MSRMVMGLGNPVSSIHSSYCVLIPRNPNKALHTQHPVFKINHAHLSHFHYKTSATSFTSCRLHARRKESIAPPAVVSDLDDEYDGFDDDELDYDDKDEDE
EEFMPFGKMKKWLETRPRGFGGSKVYDTRVEDKLLEEIEQSRLAQAANINNLKYPNPAAPNKTHHQAKNAPDVIPTGIRVHVINLPKKKNIHRDLKTAFK
DVQGIINIIPAVSGNKKTKDPICKGFAFVDFKSEEDAARFVQQFSKQSIAFGKIQKQIKCEMKKSSSLSSSDDESAGSFASDISKSDGMDDSFDDPLLMN
SVTEGERNADFKMDDSFLEETVSDIFESDDLDEELEDITENVESVSKSDLSSYDSSEPRMEAATDSLSPKKQHKKRASKKKIIAKGGAKKVPKLAIPGSA
KRLRIKEKAVLTDVFTKYGLKTTAASAKES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70200 RNA-binding (RRM/RBD/RNP motif... Potri.008G146700
[exp]
0 1
AT2G34640 HMR, PTAC12 HEMERA, plastid transcriptiona... Potri.001G358400
[exp]
4.47 0.9662
AT3G54210 Ribosomal protein L17 family p... Potri.006G113500
[exp]
4.79 0.9750
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Potri.008G118700
[exp]
6.48 0.9727
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.003G191000
[exp]
8.48 0.9655
AT5G52960 unknown protein Potri.012G033700
[exp]
9.16 0.9677
AT3G02660 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl... Potri.014G140400
[exp]
9.21 0.9661
AT5G23040 CDF1 CELL GROWTH DEFECT FACTOR 1, P... Potri.012G057700
[exp]
9.48 0.9614
AT2G02740 WHY3, ATWHY3, P... PLASTID TRANSCRIPTIONALLY ACTI... Potri.010G092500
[exp]
10.09 0.9496
AT2G38025 Cysteine proteinases superfami... Potri.016G110400
[exp]
11.22 0.9658
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.016G072200
[exp]
12.40 0.9657

Potri.008G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.