Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24095 215 / 5e-71 Putative thiol-disulphide oxidoreductase DCC (.1) AT1G52590 75 / 1e-16 Putative thiol-disulphide oxidoreductase DCC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G213200 [exp] 65 / 4e-13 AT1G52590 222 / 5e-75 Putative thiol-disulphide oxidoreductase DCC (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030833 [exp] 230 / 1e-76 AT1G24095 253 / 7e-86 Putative thiol-disulphide oxidoreductase DCC (.1) Lus10030653 [exp] 210 / 2e-69 AT1G24095 229 / 2e-77 Putative thiol-disulphide oxidoreductase DCC (.1) Lus10036091 [exp] 71 / 3e-15 AT1G52590 232 / 8e-79 Putative thiol-disulphide oxidoreductase DCC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04134 [poplar] [flax] DUF393 Protein of unknown function, DUF393
Representative CDS sequence Show only first row Show all	>Potri.008G147000.3 pacid=42807519 polypeptide=Potri.008G147000.3.p locus=Potri.008G147000 ID=Potri.008G147000.3.v4.1 annot-version=v4.1 ATGATGTCGACGAAGATGATGGTCAGACGGATTAGAAAAGTGGCTCCATTTTTATCTTCTTCCTCATCATCTCCATTAAAATCTGGCTGCGGCTGGTTTT CATCAAAATCATCAACGGACGTCGCTGCAGTTGATGTTGCCGACGTCAGCGCAGAAGAAGAGCTACTGTACCCATCCGTTGCTTCCACCGTGAAGCCAGT GGCCACACTCCCCACTCTCCTTCAGCCTCGTGTCGTCGTCTATGATGCTGTCTGCCATCTCTGCCACCGAGGGGTGAAGTGGGTGATTGAAGCAGACAAA TACGGGAAGATTAAGTTCTGCTGCCTGCAATCTAAGGCTGCAGAACCATATTTGGCACTCTGTGGTCTTAACCGAGAGGATGTTCTCCGTCGCTTTCTCT TCATTGAAGGTCCAGGATCATACCACCAAGCTTCCACTGCTGCACTGAGAGTAATGTCATACTTGCCTCAGCCTTACTCTGCTCCGAGCACACTCTTGAT AATTCCAACTCCTATCAGGGATGCTGTCTATGATTATGTTGCCAAGCACCGCTATGGCTGGTTTGGGAAGGCTGACGAGTGCTTAGTTTTGAAAGAGAAA GAGCTGCTTGAGCGTTTCATAGATAGGGATGAGATTATTCGTGGGGGTAGATCAGATTTGTGA
AA sequence Show only first row Show all	>Potri.008G147000.3 pacid=42807519 polypeptide=Potri.008G147000.3.p locus=Potri.008G147000 ID=Potri.008G147000.3.v4.1 annot-version=v4.1 MMSTKMMVRRIRKVAPFLSSSSSSPLKSGCGWFSSKSSTDVAAVDVADVSAEEELLYPSVASTVKPVATLPTLLQPRVVVYDAVCHLCHRGVKWVIEADK YGKIKFCCLQSKAAEPYLALCGLNREDVLRRFLFIEGPGSYHQASTAALRVMSYLPQPYSAPSTLLIIPTPIRDAVYDYVAKHRYGWFGKADECLVLKEK ELLERFIDRDEIIRGGRSDL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24095			Putative thiol-disulphide oxid...		Potri.008G147000 [exp]	0	1
AT2G32070			Polynucleotidyl transferase, r...		Potri.006G187200 [exp]	1.73	0.7781
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.006G043600 [exp]	10.81	0.6833
AT2G30000			PHF5-like protein (.1)		Potri.009G072300 [exp]	19.23	0.7632
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	27.27	0.6656
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	30.39	0.6793
AT5G17530			phosphoglucosamine mutase fami...		Potri.010G223000 [exp]	40.98	0.6898
AT1G43860			sequence-specific DNA binding ...		Potri.002G073200 [exp]	42.35	0.6637
AT4G27745			Yippee family putative zinc-bi...		Potri.001G085400 [exp]	48.23	0.6792
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.015G013900 [exp]	54.59	0.6811
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	64.49	0.6553

Compare expression of checked genes

Potri.008G147000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.