Plant FIBer expression Database

Potri.008G147600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14270 362 / 9e-125 CAAX amino terminal protease family protein (.1.2.3.4)
AT5G60750 87 / 3e-19 CAAX amino terminal protease family protein (.1)
AT2G20725 63 / 5e-11 CAAX amino terminal protease family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G097500
[exp]
84 / 3e-18 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1)
Potri.003G133800
[exp]
81 / 8e-17 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1)
Potri.019G101100
[exp]
75 / 5e-15 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036748
[exp]
389 / 2e-135 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10037179
[exp]
337 / 1e-115 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10024708
[exp]
89 / 2e-19 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1)
Lus10028751
[exp]
86 / 2e-18 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1)
Lus10017536
[exp]
85 / 2e-18 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1)
Lus10018585
[exp]
73 / 2e-14 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1)
Lus10032326
[exp]
71 / 3e-13 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1)
Lus10039818
[exp]
68 / 5e-13 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
Lus10014639
[exp]
45 / 5e-06 ND 40 / 6e-05
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0472 Peptidase_U PF02517 CPBP CPBP intramembrane metalloprotease
Representative CDS sequence
>Potri.008G147600.6 pacid=42807525 polypeptide=Potri.008G147600.6.p locus=Potri.008G147600 ID=Potri.008G147600.6.v4.1 annot-version=v4.1
ATGGTTTTTTGTTCTTCTACTACAATAGTCCCATCATCATTATCATGCCTTGCTCAATCTTCACTCTACTGTCTATCGGATTTCCCAATTCTAGTCAAAC
GGACCGGTTCTTCCCTTCTTTCCTGCAGACAGAAAGTAGTTCTGCTGAGGCCAAAGCGACGTCAGTTAGCTTCTTCAATTTATGCTGGAAAGGAATCCAA
AGCCAAAGTTGAAGAGCAGGACAAGGGATTGGAATGGCCAATAATCAAGCGATGGGACGTGCCTTGGCCATGGCAAACGATTTCCTTAACCTCACTTGCC
TGTGGAATAAGCTTTATTCTGACAGGTTTGGTTGAGGCAACGGCCATACCATATTTAGGAATTAAGATTGAAGAGCTAAGTTTAGACGAGAAAGCGGAGA
TACTGCTTTTGGACCAAAGCATTGCAACTGCCGTTGTGCTTGGAGTTCTTTATGGTATCCTCAACACCTTCCAACCTCTTCCTGAAGATGTGTTTCGCTA
TGATCTGAAGGAACCTTTCAATCTAGAAAAAGGATGGCTCTTATGGGCGGGTATTGGTCTTGCTAGTGCTCTGCTTGCTGTTGCATTGACCGGAGTTGCT
GTGTCTACTTTCAGTGGTGAGACCCCACAGAGAGAGACTGATGCTCTTGTTCGACTTCTTCCATTGATTGGATCTTCCAGTATCAGCACCGCTTGCTTGA
TTGGCATCACTGGTGTCCTTGCTCCAGTTTTGGAGGAGAATGTCTTTCGAGGATTTTTCATGGTGTCTCTGACAAAGTGGGTACCTACACCAGTTTCTGT
CCTAATTAGTGCGGCTGTATTCGCATTAGCACATTTAACTCCAGGAGAGTTTCCCCAACTATTTGTGTTAGGGACTGCGCTTGGATTTTCATATGCTCAA
ACTCGCAACCTTCTAACACCAATCACAATTCATGCTTTCTGGAACTCGGGAGTAGTCCTCATTCTCACCTTGCTTCAGCTCCAAGGATATGATATCAAGG
AATTGTTGCAGGCAACCTGA
AA sequence
>Potri.008G147600.6 pacid=42807525 polypeptide=Potri.008G147600.6.p locus=Potri.008G147600 ID=Potri.008G147600.6.v4.1 annot-version=v4.1
MVFCSSTTIVPSSLSCLAQSSLYCLSDFPILVKRTGSSLLSCRQKVVLLRPKRRQLASSIYAGKESKAKVEEQDKGLEWPIIKRWDVPWPWQTISLTSLA
CGISFILTGLVEATAIPYLGIKIEELSLDEKAEILLLDQSIATAVVLGVLYGILNTFQPLPEDVFRYDLKEPFNLEKGWLLWAGIGLASALLAVALTGVA
VSTFSGETPQRETDALVRLLPLIGSSSISTACLIGITGVLAPVLEENVFRGFFMVSLTKWVPTPVSVLISAAVFALAHLTPGEFPQLFVLGTALGFSYAQ
TRNLLTPITIHAFWNSGVVLILTLLQLQGYDIKELLQAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G14270 CAAX amino terminal protease f... Potri.008G147600
[exp]
0 1
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Potri.005G209900
[exp]
1.00 0.9757
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Potri.013G064700
[exp]
1.41 0.9753
AT2G02740 WHY3, ATWHY3, P... PLASTID TRANSCRIPTIONALLY ACTI... Potri.008G149100
[exp]
3.46 0.9701
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059600
[exp]
4.24 0.9742
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
5.00 0.9704
AT3G58140 phenylalanyl-tRNA synthetase c... Potri.013G105200
[exp]
7.74 0.9710
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.018G106400
[exp]
8.30 0.9583
AT3G28460 methyltransferases (.1) Potri.001G349800
[exp]
8.48 0.9605
AT2G29760 OTP81 ORGANELLE TRANSCRIPT PROCESSIN... Potri.005G012600
[exp]
9.94 0.9649
AT1G14030 Rubisco methyltransferase fami... Potri.008G090500
[exp]
10.48 0.9649 RBCMT.1

Potri.008G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.