Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 567 / 0 NHL domain-containing protein (.1.2) AT1G23880 554 / 0 NHL domain-containing protein (.1) AT5G14890 405 / 4e-134 NHL domain-containing protein (.1) AT3G14860 249 / 8e-77 NHL domain-containing protein (.1.2) AT1G23890 150 / 7e-42 NHL domain-containing protein (.1.2) AT1G56500 48 / 2e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094200 [exp] 859 / 0 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 587 / 0 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 277 / 8e-88 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 260 / 3e-80 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 136 / 2e-35 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 132 / 6e-34 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.009G072933 [exp] 76 / 5e-17 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1) Potri.008G122450 [exp] 75 / 1e-16 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.013G007800 [exp] 49 / 1e-05 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029176 [exp] 625 / 0 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 596 / 0 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 548 / 0 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039484 [exp] 452 / 3e-155 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10014529 [exp] 387 / 3e-130 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 335 / 1e-110 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 323 / 4e-108 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10030637 [exp] 186 / 4e-54 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030849 [exp] 141 / 3e-37 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 92 / 4e-20 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01436 [poplar] [flax] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Potri.008G147700.1 pacid=42808658 polypeptide=Potri.008G147700.1.p locus=Potri.008G147700 ID=Potri.008G147700.1.v4.1 annot-version=v4.1 ATGAGTGAAATGGGGAAGAATGTGCTGGTTTTGTGTTTTATTATGCTCTTGTTTTTTGGAGGTGTCACTTCAGTTCCTACTACTACTTCACCAGCAAAGA TTGTTGGTGGGCTTTTCTCAAATGTCGTGTCTGCTCTCATGAAGTGGTTGTGGTCTCTGAAGGCCACCACCAAAACAGTGATCTCTGGTCGTCCAATGAT GAAGTTTGAGAGTGGGTATACTGTGGAGACTGTGTTTGATGGAAGCAAGCTTGGGATCGAGCCTTACTCCGTGCAGGTGTTGCCCAGTGGAGAGCTTCTG ATTTTGGATTCTGCTAACAGTAACATTTACAGGATATCTGCTTCCTTGTCTCTCTACAGCAGACCTAAGCTGGTTGCTGGATCCCATGAAGGATACTCTG GACACGTGGATGGGAAGTTAAGAGAGGCAAAGATGAACCACCCAAAAGGGCTTACTGTAGATGACAGAGGAAACATTTATGTTGCAGACACCATGAATAT GGCAATCAGGAAGATAAGTGATGCAGGGGTTACAACAATTGCTGGAGGGAAATGGGGCCGAGGGAGCCATGTTGATGGGGCAAGTGAAGATGCAAACTTT TCTAATGATTTTGATGTGGTTTACATAGGAAGCAGTTGCTCCCTACTTGTTATAGACAGAGGAAATCGAGCCATCAGGGAGATCCAGCTGCATTTTGATG ACTGTGCTTATCAATATGGAAGTGGTTTTCCTCTTGGAATTGCAGTGCTAGTAGCAGCTGGCTTCTTTGGTTACATGCTAGCACTGCTGCAACGTAGGGT GGGAATGATTGTTTCTCCTCAGAATGTTTCAATGAAAATGAGCACTACAGGAATTCCTTACCAGAAGCCTATCAAATCGATCAGGCCACCTTTAATCCCT ACCGAGGATGAACAGGAGAAGCATGAAGAAGGCCTATTTGGATCACTTGGCAAGCTTTTCATCAACACTGGGGCTTCGGTTATGGAAATTTTCGGAGGTA TAGTCCCCAGTTTTAGGAAGAAGCCAGTAAGCTATCAATATCAAAACTACCAGCAGCAGCAGTATCAGCATCAGAAGCAATTGTCTTCTTGGCCTGTACA AGACAGCTTTGTGATACCAGATGAAGACGAGCCTCCTTCAATTGAATCCAGAACCCCAACACCAAGGAAAACCTACCCATTCATGTCGAAGGATACGGAG AAGATGCACCAATGGCGGCAAGGTCGTTCCATCTATAGTGGGTGGGATGGTGATTTACAGCAGCAGCAGCATCAGCATCATCATCGGTATCAATCCTCTA CACCACATACTTACTATGAGCAAAGCTATGAGAAAACCAATGAGATTGTATTTGGGGCAGTTCAAGAGCAGGATGGGAAGTATGAAACTATGGTGACAAA GCCCGTTGATTATGGAGATCCAAAACACTACCACCACAACATTCGTTCTCGAACCAATTCTCTCCATTATGCTAAGGGGTATTAA
AA sequence Show only first row Show all	>Potri.008G147700.1 pacid=42808658 polypeptide=Potri.008G147700.1.p locus=Potri.008G147700 ID=Potri.008G147700.1.v4.1 annot-version=v4.1 MSEMGKNVLVLCFIMLLFFGGVTSVPTTTSPAKIVGGLFSNVVSALMKWLWSLKATTKTVISGRPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELL ILDSANSNIYRISASLSLYSRPKLVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYVADTMNMAIRKISDAGVTTIAGGKWGRGSHVDGASEDANF SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGMIVSPQNVSMKMSTTGIPYQKPIKSIRPPLIP TEDEQEKHEEGLFGSLGKLFINTGASVMEIFGGIVPSFRKKPVSYQYQNYQQQQYQHQKQLSSWPVQDSFVIPDEDEPPSIESRTPTPRKTYPFMSKDTE KMHQWRQGRSIYSGWDGDLQQQQHQHHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDGKYETMVTKPVDYGDPKHYHHNIRSRTNSLHYAKGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	0	1
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	3.00	0.7662
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	3.46	0.7574
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	4.24	0.7169
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.002G032200 [exp]	4.58	0.7114
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	7.34	0.7005	RHEL901,SDE3.1
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	7.74	0.7324
AT3G53850			Uncharacterised protein family...		Potri.006G090400 [exp]	10.19	0.7046
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	11.22	0.7612
AT5G24010			Protein kinase superfamily pro...		Potri.017G143049 [exp]	11.48	0.6471
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	13.26	0.6817

Compare expression of checked genes

Potri.008G147700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.